Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01722 ATGGCATCATCTTCTTCTTTTCCAAAGTTTACAGTGCAAAGGTGCGAACCCCAGTTGGTAGTTCCTGCTATCCCCACTCCTCACGAAGTTAAGCCACTTTCCGACATTGATGATCAAGAAGCCCTGCGTTTCCACGTTCCCTTCATACAAATTTATCGAAAGCAAGCATCAATGGCAGAGAAAGACCCAGTTCAAGTCATTCGCCAAGCACTCTCCCAGACACTTGTCTTCTATTACCCGTTTGCGGGTAGGCTTAGGGAGGGTCCTCATCGCAAATTGATGGTGGATTGCACCGGAGAAGGTGCCATGTTCGTTGAGGCAGATGCTGACGTCACACTCGATCAGTTCGGCGATTCTCTCCAGCCTCCATTCCCATGCTTCCATGAACTGCTATTCCATGTTCCTGCCTCACAACAAATTACCAACACTCCCCTTCTACTCGTACAGTTTGTTGATGTCGGAAATGAACTGATGAAATCACAGGTGACACGCCTTAGATGCGGTGGTTTCATCTTGGCCTTCTGCTTCAACCACATCATGTGTGACGGAGCTGGTCTTTCGCAATTCACGAGCACGTGGACTGAAATGGCTCGTGGTGCAACCAAACCTTCCATTCCACCAGTTTGGCGAAGGGAGCTTCTCATGGCAAGACATCCACCACGGATCACATGCAACCATCGCGAATACGAACATGTCCCAAACACAGTCAAAGGAGCCGTCACATCAAACCAACATGACATGGTTCTTCGGTCGTTCTTCTTTGGACCTTCCGAAATAGCTGCTATTCGTGGCTTGGTTCCATCCCACCTTAAGCAATGCACAACGTTTGATCTCATCGCGGCATGCATCTGGCGCTGTCGTACAAAAGCATTGCAGATAAAGGCAGACGAGGATGTTCGCATGATGGTGATAGTGAATGCACGCGGAAGGTTGAATCCTCGTTTACCAGTTGGCTACTACGGCAATGCTATTGCATACCCAGCAGCAGTTACGACTGCAGGGAAGCTTTGTGAAAATCCGGTTGGGTACGCAGTGGAGTTAATAAAGAAATTGAAAAATGAGGTGACAGAAGAGTACATGCATTCGGTGGCAGATTTGATGGTGATTAAGGATCGGTGCATGGTTACAACTGTAAGGTCTTGTATCATTTCAGATTTGACACGTTTGAAGCTTAGAGAAGCGGATTTTGGGTGGGGTGAGGCTGTGTATGGTGGAGTGGCTGAAGGTGGAGCTGGGAGGTTTATTGAAGCAACCTATCAGGTTTTGCATAGAAATGCAAAAGGAGAAGAAGGCATCATCTTACCAATTTGGTTGCCTGCTGAAGCTATGGATAGGTTTGCGAAAGAGTTGGATCATATGTTTGGCAACCAAAACCAAACTAATACTCGGACTCCTAGGTCAATCATGTCTAATTTATAG 1419 0.4715 MASSSSFPKFTVQRCEPQLVVPAIPTPHEVKPLSDIDDQEALRFHVPFIQIYRKQASMAEKDPVQVIRQALSQTLVFYYPFAGRLREGPHRKLMVDCTGEGAMFVEADADVTLDQFGDSLQPPFPCFHELLFHVPASQQITNTPLLLVQFVDVGNELMKSQVTRLRCGGFILAFCFNHIMCDGAGLSQFTSTWTEMARGATKPSIPPVWRRELLMARHPPRITCNHREYEHVPNTVKGAVTSNQHDMVLRSFFFGPSEIAAIRGLVPSHLKQCTTFDLIAACIWRCRTKALQIKADEDVRMMVIVNARGRLNPRLPVGYYGNAIAYPAAVTTAGKLCENPVGYAVELIKKLKNEVTEEYMHSVADLMVIKDRCMVTTVRSCIISDLTRLKLREADFGWGEAVYGGVAEGGAGRFIEATYQVLHRNAKGEEGIILPIWLPAEAMDRFAKELDHMFGNQNQTNTRTPRSIMSNL 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01722 472 Gene3D - 230 450 IPR023213 -
Vimu2g01722 472 Pfam Transferase family 12 452 - -
Vimu2g01722 472 Gene3D - 6 229 IPR023213 -
Vimu2g01722 472 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 18 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01722 Vimu-Chr2 12285348 12286817 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01722 43 405 Monolignol Biosynthesis Gene Families AT5G48930 30.400 6.78e-52 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01722 K19861 - gmx:100792864 644.81