Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01717 ATGGCCTCATCATCATCTTCTTCTTCTCTCAAGTTTACAGTGAGAAGATGCCAACCGCAGCTGGTGCCTCCTGCTATCCCCACTCCTCATGAAGTTAAGCTACTTTCCGACATTGATGATCAAGAAGCCCTGCGTCTCCACGTTGCGATGGTACAAATTTATCCAAAGCATGCATCAATGGCAGAGAAAGATCCAGTTCCAGTGATTCGCCAAGCACTCTCGCAGACACTTGTCTTCTATTACCCATTTGCGGGTAGGCTTAGAGAGGGGCCTCACCGGAAATTAATGGTGGATTGCACTGGAGAAGGTGCCATGTTCGTTGAGGCTGATGCAGACGTCACACTAGATCAGTTTGGCGATTCTCTTTACCCTCCATTCCCATGCTTCCATGAACTTCTATACGATGTCCCTGGCACACAAGAAATCACCAACACTCCCCTTCTACTCGTACAGTTAACTTTAGAAAAAGTTTACCCAAGCAAAATGTGTGAACTTGTTGAATATGGAATAAAAATGCAGGTGACACGACTCAAGTGTGGTGGTTTCATTTTAGCCATTGGCCTCAACCACACCATGTGTGATGCACCCGGTTACAAGCAATTCTTGAACGCTTGGGCGGAAATGGCTAGAGGTGCAACAAAACCTTCCATTGCACCAGTGTGGCGTAGGGAGCTCCTAATGGCAAGAGACCCACCTCGCATTACATGCAACCATCGCGAATTCGAACAAGTCCAAGATACCCTTTCTTCTTCAGACCAAAACATGGTTCAACGATCATTCTTCATTGGACCACTCGATATAGCTGCACTTCGGCGCTTGATTCCCCAACACCAGCACTGCACCACATTTGATCTCATCACAGCATGCCTCTGGCGCTGTCGCACAAAAGCACTGCAAATAGAGGCAGACCAGGATGTTCGCATGATGTGCGTAGTCAACGGACGTGGTCGGTTCAATCCTCCACTTCCTGTTGGTTACTACGGCAACGTGGTCGCATATCCGGCGGCAGTAACGACTGCAGGGAAGCTTTGCAGAAACCCATTTGGGTATGCGGTGGAGTTGATATATAAAGTGAAAGGTGAGATGACAGAAGAGTACCTGCAATCTGTTACAGACCTTCTGGTGATGAAGGGACGATGCTTATTCACAACTGTGAGGTCTTGTATTGTGTCATATATGGCACGTTTGAACTTTAGAGAAGTGGATTTTGGTTGGGGTGAGGCTGTGTATGGTGGAATGGCCCAAGCTGGGGGCTTCTTAGGAACTTCGTATTTCTGTTCTGCTAAGAATGGAAAAGGAGAAGAAGGCATAATATTTCCGATTTGGTTACCTGCTGAAGCTATGGAAAGGTTTGCTGAAGAGTTTAACCACATGCTAGGCAACAAAAACCAACCACAAACCAGTTCTGCTACTTTTATAATGTCTACCCTCTAA 1434 0.4672 MASSSSSSSLKFTVRRCQPQLVPPAIPTPHEVKLLSDIDDQEALRLHVAMVQIYPKHASMAEKDPVPVIRQALSQTLVFYYPFAGRLREGPHRKLMVDCTGEGAMFVEADADVTLDQFGDSLYPPFPCFHELLYDVPGTQEITNTPLLLVQLTLEKVYPSKMCELVEYGIKMQVTRLKCGGFILAIGLNHTMCDAPGYKQFLNAWAEMARGATKPSIAPVWRRELLMARDPPRITCNHREFEQVQDTLSSSDQNMVQRSFFIGPLDIAALRRLIPQHQHCTTFDLITACLWRCRTKALQIEADQDVRMMCVVNGRGRFNPPLPVGYYGNVVAYPAAVTTAGKLCRNPFGYAVELIYKVKGEMTEEYLQSVTDLLVMKGRCLFTTVRSCIVSYMARLNFREVDFGWGEAVYGGMAQAGGFLGTSYFCSAKNGKGEEGIIFPIWLPAEAMERFAEEFNHMLGNKNQPQTSSATFIMSTL 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01717 477 Gene3D - 252 461 IPR023213 -
Vimu2g01717 477 Pfam Transferase family 17 153 - -
Vimu2g01717 477 Pfam Transferase family 171 458 - -
Vimu2g01717 477 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 20 451 - -
Vimu2g01717 477 Gene3D - 8 243 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01717 Vimu-Chr2 12267908 12269657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01717 10 455 Monolignol Biosynthesis Gene Families AT5G48930 29.247 4.43e-50 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01717 K19861 - pvu:PHAVU_006G098400g 721.465