Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01710 ATGGCATCTCAACAACACGATGCCGTTTTCCGCGAAGAAGACATGGACGACGACGACGACGAGTCCCAGGAGGACGAAGAGTTCGAAGAAGAGGACGACGTTTTGGCCGCCGACGATGAAGAAAACGAGCCCTCTCCTTCCACCGCTCTCGCCGTCACCGTCGCCGTCCCGAGTTCCGCCATCTCAAACGGCGGAGGGGCTCCACTATCCACGCCCACCGCCACCACCATCGTCATCGGTGACTCCTCCGATCCAAAGCGGCGGCGCCTGGAGCCAATCGAGGAAAAGAAGCCTCCGCCGCCGCTAGACGACTCGCGGCGGCTGTTCCAGCGCCTGTGGACCGACGAGGACGAGATCGAGCTCCTTCAAGGGTTCCTGGACTACACCTCTCAGAGAGGATCCTCTCACCACAACGACACCGCTCTGTTCTACGACCAAATCAAGTCGAAACTCCAACTCGATTTCAACAAGAACCAGCTGGTGGAGAAGATCCGAAGGCTGAAGAAGAAGTACCGAAACGTCCTCAACAAGATTGGCTCCGGCAAGGAATTCTCCTTCAAGAGCGCACACGATCAAGCCACCTTCGAAATCTCTCGCAAGATCTGGAGCAGCGTGGCTCCAATCGGCGAAAATTCCTTGGACGACGACGAAATCAACCCTTGCCCCAACCCTAACCCTATCATCCCCCACCCTAACCTTAATTTTAGCCCCGTAATTCTCAAGAACGAAACGACCTCCAGGAATTCAGCGGAGAAGAAAACACCGAAACGCTCCCGGCCTCGATCGGCGGTGAAAGTCGAGCCAAACGATGGATCCGCGTCGAACAGAGATCTTAATTGTACTAGCAATGCTACGACTACGGCTACTCCTACTGCTACCGCTACTAACACTACCGCTACTACTACTACTAATAACAATTATAACAGTGGTTATAGCAATAACATACCGAGTTTGATTGAGGAGACGGTGAGGAGTTGTCTGTCGCCGGTGGTGAGGGAGTTGGTGGGAGCGATGGGAGGGGGAGCGTTTGGTGGGAGAGGATTTTCCTTGAATTTAAACCCCATGCCTTTGATGAATTTGAGTTATGGTGGTGGAGAATTGTTGGATGAAAAATGGAGGAAGCAACATATATTGGAATTAGAAGTGTATTCGAAGCGGTTGGAACTGGTGCAGGATCAGATCAAAGCTGCGATGGAGGAGTTGCGGTCCGGTGGAGGAGGAGTTTGA 1227 0.5314 MASQQHDAVFREEDMDDDDDESQEDEEFEEEDDVLAADDEENEPSPSTALAVTVAVPSSAISNGGGAPLSTPTATTIVIGDSSDPKRRRLEPIEEKKPPPPLDDSRRLFQRLWTDEDEIELLQGFLDYTSQRGSSHHNDTALFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKIGSGKEFSFKSAHDQATFEISRKIWSSVAPIGENSLDDDEINPCPNPNPIIPHPNLNFSPVILKNETTSRNSAEKKTPKRSRPRSAVKVEPNDGSASNRDLNCTSNATTTATPTATATNTTATTTTNNNYNSGYSNNIPSLIEETVRSCLSPVVRELVGAMGGGAFGGRGFSLNLNPMPLMNLSYGGGELLDEKWRKQHILELEVYSKRLELVQDQIKAAMEELRSGGGGV 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01710 408 MobiDBLite consensus disorder prediction 12 40 - -
Vimu2g01710 408 MobiDBLite consensus disorder prediction 46 80 - -
Vimu2g01710 408 MobiDBLite consensus disorder prediction 82 105 - -
Vimu2g01710 408 PANTHER BNAANNG10740D PROTEIN-RELATED 4 400 IPR007592 GO:0006355
Vimu2g01710 408 MobiDBLite consensus disorder prediction 246 264 - -
Vimu2g01710 408 MobiDBLite consensus disorder prediction 268 291 - -
Vimu2g01710 408 MobiDBLite consensus disorder prediction 243 291 - -
Vimu2g01710 408 Coils Coil 157 177 - -
Vimu2g01710 408 MobiDBLite consensus disorder prediction 1 105 - -
Vimu2g01710 408 Coils Coil 380 400 - -
Vimu2g01710 408 Pfam Protein of unknown function, DUF573 109 203 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01710 Vimu-Chr2 12214001 12219911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01710 47 403 GeBP Transcription Factor Family AT5G28040 45.455 1.60e-87 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Vimu2g01710 DUF573 1.6e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01710 - - gmx:100779712 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01710 2 12214001 12219911 Vimu3g02165 3 36462160 36463308 PCT