Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01707 ATGAATGAACTTCAAACAGATTCCTCTGCCTCTTCGGAGTTCGTCGAAGTTGATCCAACTGGCAGATACGGCAGATACAATGAAATCCTCGGCAAAGGAGCTTCCAAGACAGTATATAGAGCATTTGATGAGTATCAAGGGATTGAAGTTGCTTGGAACCAAGTCAAGTTGTATGATTTTCTGCAGAGCCCTGAAGATCTCGAGAGGCTTTACTGTGAAATTCATCTTCTCAAAACGCTGAAGCACAAAAACATAATGAAGTTTTACACGTCTTGGGTCGATACTGCTAATAGGAATATCAACTTTGTGACTGAAATGTTCACTTCTGGCACCCTTAGGCAGTATAGACAAAAGCACAAAAGAGTTAACATTAGGGCTGTGAAGCATTGGTGTAGACAGATCCTGAGAGGGCTTCACTATCTTCATAGCCATGATCCACCTGTGATCCATAGAGATCTAAAATGTGATAATATTTTTGTGAATGGAAACCAAGGGGAAGTTAAGATTGGGGATCTTGGGTTGGCAGCAATTCTGCGCAAGTCTCATGCTGCTCATTGTGTAGGAACGCCTGAATTCATGGCACCAGAAGTTTATGAAGAATCCTATAACGAATTAGTTGACATATATTCCTTTGGGATGTGTGTGTTAGAAATGGTTACATTTGAATATCCTTATAGTGAATGTAGTCATCCAGCGCAAATCTACAAGAAAGTTATTTCTGGGAAGAAACCAGAAGCCTTGTATAAAGTGAAAGATCCAGAAGTGCGAGAATTTGTTGAGAAATGTCTGGCAACAGTGTCTCTAAGGCTCTCTGCAAGGGAGCTTCTAGATGATCCTTTTCTTCAGATTGATGATTATGAGTATGATTTGGGGCCTGTGGAGAGTGGAGCATTTGATGGCAAAGGTCCTATTATCCATCAGCCATTTTTTAATCTTCACCGGAGCTATAGTAACATGAGTACTGAACACTCAAATTGCTTTGAATATGAAGGAGACTGGATTTCTCATCCGGCTGAGATTGAACCTAATGGAATTGAACTTTTCAAGTGCCACGATGATGATGAAGCCTCCGAAGAAGATGTTGACATAAGCATCAAGGGAAAGAAGAAAGATGATGGTGGAATTTTCTTGAGATTGAGAATTTCAGACAAAGAAGGACATATTCGAAATATTTATTTCCCATTTGACATAGAGATGGACACAGCATTAAGTGTAGCAACTGAAATGGTAGCAGAACTCGACATTACTGATCAGGATGTTACCAGCATAGCTGATATGATAGATGGGGAAATTGCTTCCTTGGTACCTGAATGGAAACCAGGACCAGGAATTGAAGAATCTAACCATTTTGTAAACAATTTCTTTTGTCACAATTGTGTGTCTAACGATGCTTCTGGTGGGAATATTATGGATTTTCATTCACATAATCAAGTTGGAAAGAACTCTCAGGTTCCTCAATGCTGTAGGCATGGATGTACTTCGATGCATGGCCGGTTCGAGGAGATAACATTCCCATCTGAGTATGACAATCATGTTAGAGGGGACACAGTCACATCTATCGAATCAAACCAACCGGAGTGCCAGCAGTATCAGGAGCTATGGAATCATCAAGAAAGTTGTGAACTGAGTTCAGTAGAGTCTGATCAAAGCCATTCTGATGAGCAATATGAACAGTTAGATAAATCAGTATTGGCAGAAGACAAAGGAAAGGGTGTTTTGGAAAACAAGTTTGCACATGATCCAGGAAACCCCCCACCAAGTTTATCTGGGAATTATTTGTCTACTATCAGTTTGTTATGTCCTGGCTCAGGGAGTGAGTATGAGAAAGAGGTTCAACAAGAACTGAGATGGCTCAAAGCAAAACACCAAATGGAGTCAAGGGATCTCAGGGATAAAAGGTTTGGTGCAGCAGCCAAATCTTCGTCACATTCTAGTAACAAAGTCCACAAAACAGAACAAGGCACTGTGCTGCCATTGACAGAAACAGTAAACGGAGTGAAAAATGGAATTCACTTGAAACCCCTGTGTAATTTATGGGATTATGATTCCAGTTACCCTTCTCTAATCCAAAAGAGCCACTCCAATTTGGACATCCAAAGTCTCCAAAATTGTGAGGTGATGTGTTCTCACAAAGAAGGTATTATGGCTACTGCCAAGAGTTTTTACACAGGGTCACTTCGAGACACTCCATACAGAACAGTTTCCCTTCCCGTTGATGCTGTGGATATATAA 2232 0.4068 MNELQTDSSASSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRQKHKRVNIRAVKHWCRQILRGLHYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEESYNELVDIYSFGMCVLEMVTFEYPYSECSHPAQIYKKVISGKKPEALYKVKDPEVREFVEKCLATVSLRLSARELLDDPFLQIDDYEYDLGPVESGAFDGKGPIIHQPFFNLHRSYSNMSTEHSNCFEYEGDWISHPAEIEPNGIELFKCHDDDEASEEDVDISIKGKKKDDGGIFLRLRISDKEGHIRNIYFPFDIEMDTALSVATEMVAELDITDQDVTSIADMIDGEIASLVPEWKPGPGIEESNHFVNNFFCHNCVSNDASGGNIMDFHSHNQVGKNSQVPQCCRHGCTSMHGRFEEITFPSEYDNHVRGDTVTSIESNQPECQQYQELWNHQESCELSSVESDQSHSDEQYEQLDKSVLAEDKGKGVLENKFAHDPGNPPPSLSGNYLSTISLLCPGSGSEYEKEVQQELRWLKAKHQMESRDLRDKRFGAAAKSSSHSSNKVHKTEQGTVLPLTETVNGVKNGIHLKPLCNLWDYDSSYPSLIQKSHSNLDIQSLQNCEVMCSHKEGIMATAKSFYTGSLRDTPYRTVSLPVDAVDI 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01707 743 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01707 743 FunFam probable serine/threonine-protein kinase WNK9 107 286 - -
Vimu2g01707 743 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 650 - -
Vimu2g01707 743 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Vimu2g01707 743 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01707 743 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01707 743 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 376 430 IPR024678 GO:0004674|GO:0005524
Vimu2g01707 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Vimu2g01707 743 CDD STKc_WNK 22 281 - -
Vimu2g01707 743 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Vimu2g01707 743 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
Vimu2g01707 743 Gene3D - 373 439 - -
Vimu2g01707 743 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01707 Vimu-Chr2 12192976 12195994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01707 1 502 MAP Kinase Kinase Kinase AT3G22420 57.169 0.0 586
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vimu2g01707 Pkinase 1.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01707 K08867 - gmx:100790554 1253.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01707 2 12192976 12195994 Vimu2g01707 2 12192976 12195994 ECH
Vimu2g01707 2 12192976 12195994 Vimu3g02169 3 36503114 36506126 PCT