Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01699 ATGTGCGCTTGGGCGTGTTCAGTGACTGTGTGCAAGCGTCCACTCCACAGTAAGCGCTTGCACGTGCTGGCTGCTGTTCCTGTACGACGCCACTGTATTCCTTTGTACCAACTCAAGATTCCCATCCTTAAATCATCGGTCCCACTCTCTGCTTCTTTTCACGTGTCCTGCCATCCCTATGCCGTTAATTACACCATCGTCACCGTCACCCACTCCCACTCTCACTCCCCCGCGCGTCCACATCGACAATCTTCAATTCAATATACCTTGGTTGGATTGACTTGTCCAAGTTCACTTTCTCCTAAAAGAGTGTCGGGGCCATCTTTTTCCTTTTCATGCAAGGACAATCTCCTTGATAAACGCGAGGGAGAAAGAGAAAGAAAGAAAGAAAGAAAGGATTTTGTTGTAGCAATTGAGCAGGAGGTGGAAGAGGAGGAGGAGAAAGGAAGAAAGAAAGAAAGAAAGAGCATTTTCCAACAGAAACAGAAACATTTCCACCAATTCATAGCACCAAGGACCACTCTTCCTCTTCACTTGTCTTTCCCTCTTCATGCCTCTTCAACTTCCCCAACTACCTTCTTACCCTTTGATCCCTATAACCCTATTACTTCTCAATCTCAACAACACCATTTCCCACTCCAAACCAATCTCTTCCACCCATTGCACCCTCCTTCTCCTCCTACCCACAAACACAAGCTTCCTTCAATCCACCTAACCGATTCCTGGTCCAACGATGAACTCCTTGCACTTTTCAGAATCAGATCTACCATGGAAAATTGCTTCCCGGAGCACACATGGGACCATGTCTCCAGCTATAGTACTTTAGCTCGCACGCTGACACAGCACGGTAAGACACAGAGCCCGAGAGAAAGATATTTATATATAAGGCTCCGCCGGCCGAAGCTGGGAGAGCTTGGGTTTAAGAAGAGTGCTGAGAAGTGCAAGGAGAAGTTCGAAGATGAGAGTGGATATTTCGACAACGTTAGTAACTACGGGAAGAACAATTACCGGTTCCTTAGCGAGCTGGAGGAGCTTTGTCAAAACCCTGATTCGGGTGGTGGTGGTGATTGTGACGGTGATGATGGAATCGTGAGGAGTGAAAAGACCCTCCTCCACCTTGGAGCAGACAACATGGGCCATCGAATATGTGACGGAACAGATGACAAGGTTGTGGTGGAGAAGTCAAAGGAGCGAAAGAGGAAGAGGCGTGACAGGTTCGAAATGTTCAAGGGTTTTTGCGAGAGTTTTGTGAACAAGATGATGGCTCAACAGGAAGAGATTCACAACAGGCTCCTGGAGGACATGGTGAAAAGGGACCAAGAGAAGTTTGCCAGAGAGGAAGCATGGAAGAAGCAAGAGATGGAGAGGATGAACAAGGAGCTTGACATCATGGCACAGGAGCAAGCTATCGCCGGAGACAGACATGCTACCATAATTGAATTCTTAAAGAAATGTGCAACAACAACAACAATAACGTCAACAACTTCACCATCTCCTCCAAGCCAAAATGCCAACTGTTCCAGTCTTCCAAATCGTTCACTATTGCACTCACTAAACCCTAATAGTCCTTCCAATGAAGACAACAACCTTGATCCAACACCAACGCTTCTGAATCATGATCAAACTAAGTTATTAAGAGCAGAAAACCCTAGTTCGAGTGAGACATTATTACAAGTTCCTTCTTCCTCCAACTCTTCCCCAACTCCCCACAACCCTACTTCTTCCCTCAATAGCCAAAACAATACTATCCCATTAGAGTCAAATTCAGTTTCTACTTACAAGACAACCTCAACAACCCCACCAGGCAGCACTGAGAATTCGAAAGATGATGTTGGGAGAAGATGGCCAAGGGATGAAGTGCTAGCACTGATAAACCTGAGGTGCACGAGTGTAAGTAACAACAACAACAGCGGCAGTGAAGAAAAAGAAGGAAATAACAAGGGTCCTCTGTGGGAGAGAATCTCGCAAGGGATGTCAGAGGTGGGATACAAGAGAAGCGCAAAGAGATGCAAAGAGAAATGGGAGAACATAAACAAGTACTTCAGAAAAACTAAGGATGTTAACAAGAAAAGGTCCCTTAATTCTAGGACCTGTCCTTATTTCCATCAACTGAGTTGCTTGTATGGTCAGGGAAAAATCGTGGCAGCACAGTCTGAAAGAGAAGGGAACTACATGAGTCCAACCGCGAATTCCGGCCAAATGCCACCGGATGTTGACGATGAAGATGAGTCTTCTCATGTGGGGTCTGGTGGTTTGGATCATTATGCATGTTAA 2274 0.4595 MCAWACSVTVCKRPLHSKRLHVLAAVPVRRHCIPLYQLKIPILKSSVPLSASFHVSCHPYAVNYTIVTVTHSHSHSPARPHRQSSIQYTLVGLTCPSSLSPKRVSGPSFSFSCKDNLLDKREGERERKKERKDFVVAIEQEVEEEEEKGRKKERKSIFQQKQKHFHQFIAPRTTLPLHLSFPLHASSTSPTTFLPFDPYNPITSQSQQHHFPLQTNLFHPLHPPSPPTHKHKLPSIHLTDSWSNDELLALFRIRSTMENCFPEHTWDHVSSYSTLARTLTQHGKTQSPRERYLYIRLRRPKLGELGFKKSAEKCKEKFEDESGYFDNVSNYGKNNYRFLSELEELCQNPDSGGGGDCDGDDGIVRSEKTLLHLGADNMGHRICDGTDDKVVVEKSKERKRKRRDRFEMFKGFCESFVNKMMAQQEEIHNRLLEDMVKRDQEKFAREEAWKKQEMERMNKELDIMAQEQAIAGDRHATIIEFLKKCATTTTITSTTSPSPPSQNANCSSLPNRSLLHSLNPNSPSNEDNNLDPTPTLLNHDQTKLLRAENPSSSETLLQVPSSSNSSPTPHNPTSSLNSQNNTIPLESNSVSTYKTTSTTPPGSTENSKDDVGRRWPRDEVLALINLRCTSVSNNNNSGSEEKEGNNKGPLWERISQGMSEVGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLNSRTCPYFHQLSCLYGQGKIVAAQSEREGNYMSPTANSGQMPPDVDDEDESSHVGSGGLDHYAC 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01699 757 MobiDBLite consensus disorder prediction 549 614 - -
Vimu2g01699 757 CDD GT1 613 685 - -
Vimu2g01699 757 Coils Coil 135 155 - -
Vimu2g01699 757 PANTHER FI21293P1 239 736 - -
Vimu2g01699 757 MobiDBLite consensus disorder prediction 490 537 - -
Vimu2g01699 757 MobiDBLite consensus disorder prediction 630 650 - -
Vimu2g01699 757 ProSiteProfiles Myb-like domain profile. 614 678 IPR001005 -
Vimu2g01699 757 MobiDBLite consensus disorder prediction 549 606 - -
Vimu2g01699 757 Pfam Myb/SANT-like DNA-binding domain 613 704 IPR044822 -
Vimu2g01699 757 Gene3D - 615 683 - -
Vimu2g01699 757 Gene3D - 242 326 - -
Vimu2g01699 757 MobiDBLite consensus disorder prediction 723 757 - -
Vimu2g01699 757 FunFam Trihelix transcription factor GTL2 615 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01699 Vimu-Chr2 12120641 12123350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01699 406 710 Trihelix Transcription Factor Family AT5G28300 48.544 6.24e-75 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu2g01699 Myb_DNA-bind_4 6.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01699 - - vra:106774627 1014.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01699 2 12120641 12123350 Vimu2g01699 2 12120641 12123350 ECH
Vimu2g01699 2 12120641 12123350 Vimu3g02180 3 36583741 36585879 PCT