Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01698 ATGTTGTATCCTTATTGCATGTACAATGAGAAAGGGAGAAAGTTTTTCCTTGAAGCTTATGTGCTTTTTAAGGAACTTCCTCTGGCATTTTGGTTAAATTCCTTCCGGAGAGAGGGAAATCTGTTGCTAACTGATAACATGGAGCAGTATGAAGTGCTTGAACAAATTGGAAAAGGCGCTTTTGGTTCTGCTCTTCTTGTGAAGCATAAGCATGAGAAGAAAAAATATGTGCTGAAGAAGATTCGCCTTGCCCGCCAAACTGAGCGCTCTCGTAGGTCTGCTCACCTGGAGATGGATCTCCTCTCCAAATTAAGAAACCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGAAACTATGTAAGTGGCTTGTTCAACTTCTTATGGCGCTTGATTACTTGCATGCGAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTTTTGACAAAAGATCATGACATACGCCTTGGTGATTTTGGACTTGCCAAAATGTTGACTTCCGATGATCTAACTTCCTCTGTCGTCGGAACTCCTAGCTATATGTGTCCTGAACTCCTTGCTGATATACCTTATGGCTCTAAATCAGATATTTGGTCCCTTGAGCTACTCGGGAACCAACATCTTCAACCATATGTTCTTAAGGTCCATCTCAAAATCAATGGCCCAAGGCGAAGTACTTTGCCAGGTCTTTGGCAAGAATCCAACTACATGAAGAAAGCTAGATTTTTGAAGTCAGAAGATGATCGTGTTTCTGTCTCTGGGTATAAGTGGCATTCTATTAGCAATGATAGGACTTTAAATCCCAATGTATCAGGAGCGGAGGTAGAGTCTCTATGCTCTACGCTAGAAATAGACTGTACTCCTGATAATATAAATCAAAGATTTGCTAAACTTTCTATTGGAGACAACCACGATTTGAAGTCACAGCATAAGTCAGCTGTTTCGAGAACTTCTAGTAATGCCAGGACTCCTAGGCTAACTGCATCAAAAGCTTCTGCTGCCCCCAAGAAATCAATGCTATCCTCAAAGAATTATAAGACGGTAAGGCAAGCCAGAGTCAATCTATTTTTAATGTTTGCCTTATGGTCGATCATGAACAAACTTAAGCATGTGATCTCTGTTGAGTGGGTTGTTTTACAAGGAACTGCTCCTGCATGTGTAATGGTATTATTCAATTTAGAATTTCTTTTTCCTGACTTTCTGAAGTCCATGGTTGTAGCTTCCTGTTTCACACAACATGAAACAACCTGTCCATACAACTCGCAGAGCATCATTGCCGTTCCCACAAAGTTGTGCCATTCAGCTGCCTCCTTGCAGGTCCAGATAGCAGAATTCCCATTAGCATCATATGAAGACCAATTGTTTCCCATCAATAGATCTTCACCAAACTCGTCACAGGGTTCCTCAGGTTTCCCTCCTTGTGGCAATGATTCAACATTGGTAGACAAACGCACAATCAAGGTATGTGACACATCCTATGTTACGCCAGGATGTACATATGCTTGGCAGGGAATCAAGCGCAGCATGCTCAAGAAAAACAATGAGGATAAAAGTGGCTCATCTGATCAAAATGCAAAAGCTGGAGCATCAAGCCACAACTCTTCAGACTTGCACTGCCGGCAGTTTGATACATCATCATTCCAACAAAGGGCGGAGGCATTAGAAGGTCTACTTGAATTTAGTGCAAGATTACTGCAGCAGGAAAGGTATGGAGAACTCGGAGTTTTATTAAAACCGTTTGGGCCAGGGAAAGCTTCACCAAGAGAAACTGCTATTTGGTTGAGCAAGAGTTTCAAAGAGAACACTTTCAGCCGAGAACAATCCACTTAA 1842 0.4142 MLYPYCMYNEKGRKFFLEAYVLFKELPLAFWLNSFRREGNLLLTDNMEQYEVLEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHLEMDLLSKLRNPFIVEYKDSWVEKKLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDHDIRLGDFGLAKMLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLELLGNQHLQPYVLKVHLKINGPRRSTLPGLWQESNYMKKARFLKSEDDRVSVSGYKWHSISNDRTLNPNVSGAEVESLCSTLEIDCTPDNINQRFAKLSIGDNHDLKSQHKSAVSRTSSNARTPRLTASKASAAPKKSMLSSKNYKTVRQARVNLFLMFALWSIMNKLKHVISVEWVVLQGTAPACVMVLFNLEFLFPDFLKSMVVASCFTQHETTCPYNSQSIIAVPTKLCHSAASLQVQIAEFPLASYEDQLFPINRSSPNSSQGSSGFPPCGNDSTLVDKRTIKVCDTSYVTPGCTYAWQGIKRSMLKKNNEDKSGSSDQNAKAGASSHNSSDLHCRQFDTSSFQQRAEALEGLLEFSARLLQQERYGELGVLLKPFGPGKASPRETAIWLSKSFKENTFSREQST 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01698 613 Pfam Protein kinase domain 118 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01698 613 MobiDBLite consensus disorder prediction 311 339 - -
Vimu2g01698 613 MobiDBLite consensus disorder prediction 516 541 - -
Vimu2g01698 613 Gene3D Phosphorylase Kinase; domain 1 43 117 - -
Vimu2g01698 613 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 47 119 - -
Vimu2g01698 613 SUPERFAMILY Protein kinase-like (PK-like) 42 204 IPR011009 -
Vimu2g01698 613 MobiDBLite consensus disorder prediction 524 541 - -
Vimu2g01698 613 SMART serkin_6 50 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01698 613 ProSiteProfiles Protein kinase domain profile. 50 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01698 613 FunFam Probable serine/threonine-protein kinase nek1 46 134 - -
Vimu2g01698 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Vimu2g01698 613 Gene3D Transferase(Phosphotransferase) domain 1 118 218 - -
Vimu2g01698 613 ProSitePatterns Protein kinases ATP-binding region signature. 56 79 IPR017441 GO:0005524
Vimu2g01698 613 MobiDBLite consensus disorder prediction 316 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01698 Vimu-Chr2 12105900 12111080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01698 46 207 AGC Kinase Gene Family AT3G08720 29.319 4.74e-20 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vimu2g01698 Pkinase 2.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01698 K08857 - var:108318806 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01698 2 12105900 12111080 Vimu2g01698 2 12105900 12111080 ECH
Vimu2g01698 2 12105900 12111080 Vimu3g02181 3 36601363 36607270 PCT