Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01697 ATGGGAAAAGCCAGCAAATGGATCAGAAACTTCCTTCTGGGGAAAAAAGATGAGAAAATCAAGAAGATCGATGCATTATGCTCTGAGGATATTAAGAGTTCTAACACGGGGAGTCTGATTGTGAGTCCCAAAGTAAAGCGCAGATGGAGCTTTGGAAAACTAACAGGTGGAAGAATAACAAGCAAGATAGTAGGGCATAAACTTTCCAGGTCTTTTGACTCAGGTGAGTCTGCAAAACTGCAAATACAAGCCTTGTTGGAAACAAAGGCTTCAAGGCGTCTTCCAACACCACTGCCAAGAACTTATAAAGATAAAAATAAAGCTGCTACAAAGATTCAGGCTGGTTTTCGCTCATATTTGGCAAGAAGAGCATTGCATGCTTTAAGGGGATTAGTAAAGTTACAAGCACTAGTGAGGGGTCACCTTGTGAGGAAACAAACAACTGCTACCCTGCGAGGCATGCATGCGCTGATGGCCATACAAGTTAGAGCGCGAATTCACAGAATTCAAATGGCAGAGGAAGTAAACCTCCTTGTAAAACAGCCTCCACAACATAGAGTAGTTGCACACTTCAGAGACCTAATAACAGAAGAAAATAAAGATTCAAAGGATATGAGTGTGGAAGAAATGTTGGAAGCTTTGAAAAGCAGAAGTGGCCCTCTAGATGGTTCATATGTTAAGGCGGCCAGAGAACGTGATTTCATGACATTCTATTCCAACCATGTGCCAGTTGTCTCCAAACGAAAACATCAATACAAGAATACTCAAATAGTAGAACCAAACAGCCCAGAAAACTTCCGGGTCATGTCTGAATTTAACACAACGGCAATGGCCGCCTTATCGACTTCTCAGCGTCACTCAGTGTCTCACCGCCAATCACTGTCACCAAATTACATGAACAAGACAGAATCTTCCAGGGCTAAAGCAAGGTCGCAGAGTGAACCAAGACAACGACCCAAAAGGGGAATGAGGAACAAAGGGAAGTCTGTGGAATCCCCATTGAATGGTCCAAGACAAAATCTGTTCTCAAACTCATTACGTTTCGATCATGGAAGCCTGGATCTTTGGTCCATCAATCTTCACGGGGACAGGAAGCGCGATTCCTTTGGCAGCAGCTCGGTCACTACTGATTCCTATTATTGA 1143 0.4339 MGKASKWIRNFLLGKKDEKIKKIDALCSEDIKSSNTGSLIVSPKVKRRWSFGKLTGGRITSKIVGHKLSRSFDSGESAKLQIQALLETKASRRLPTPLPRTYKDKNKAATKIQAGFRSYLARRALHALRGLVKLQALVRGHLVRKQTTATLRGMHALMAIQVRARIHRIQMAEEVNLLVKQPPQHRVVAHFRDLITEENKDSKDMSVEEMLEALKSRSGPLDGSYVKAARERDFMTFYSNHVPVVSKRKHQYKNTQIVEPNSPENFRVMSEFNTTAMAALSTSQRHSVSHRQSLSPNYMNKTESSRAKARSQSEPRQRPKRGMRNKGKSVESPLNGPRQNLFSNSLRFDHGSLDLWSINLHGDRKRDSFGSSSVTTDSYY 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01697 380 MobiDBLite consensus disorder prediction 280 306 - -
Vimu2g01697 380 ProSiteProfiles IQ motif profile. 105 133 IPR000048 GO:0005515
Vimu2g01697 380 SMART iq_5 104 126 IPR000048 GO:0005515
Vimu2g01697 380 SMART iq_5 127 148 IPR000048 GO:0005515
Vimu2g01697 380 MobiDBLite consensus disorder prediction 280 343 - -
Vimu2g01697 380 MobiDBLite consensus disorder prediction 307 327 - -
Vimu2g01697 380 PANTHER IQ-DOMAIN 5-RELATED 1 331 - -
Vimu2g01697 380 Pfam IQ calmodulin-binding motif 107 125 IPR000048 GO:0005515
Vimu2g01697 380 Pfam IQ calmodulin-binding motif 132 146 IPR000048 GO:0005515
Vimu2g01697 380 Gene3D - 104 157 - -
Vimu2g01697 380 ProSiteProfiles IQ motif profile. 129 156 IPR000048 GO:0005515
Vimu2g01697 380 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 147 IPR027417 -
Vimu2g01697 380 Pfam Protein of unknown function (DUF4005) 262 326 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01697 Vimu-Chr2 12103943 12105411 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01697 1 357 IQD Protein Family AT4G14750 32.787 7.71e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01697 - - var:108318790 694.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01697 2 12103943 12105411 Vimu2g01697 2 12103943 12105411 ECH