Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01694 ATGGAGAATGCGGGTGGCGACAAAATTGCATGTGAATTTTTCAAAGTATTTCTTAGAAACAGAGGTTCTACCCAGTTGCAAATACCAAGATCTTTCACTAAGTTTTTCACTGGAATCACACCATGTAAGGTTGTTCTTGTAGAACAGGATGGAAAACATTGGGATGTTAAGGTGGAAAAAATCGAAGGTGGTTTGGTTTTTAAAAGTGGATGGCAGGAATTTGCCAAGGAGAAAAATTTAGAAGATTGCGACTTTTTGGTTTTTGAGTATGATGGTAAAACTTCTTTTAATGTGAAGATATTTGGGAAAACTGGGTGCAGGAAAGTGGCTGCACCTCCAAAAGTTGTTCCAATTGTGAATTTGGAAGAAGATTCCGACGAGCATAGTCATGAAATCCAGAGCAATGGTGTTCGGAAACGTCCACTCCCAAGTCCCAAAACAAATGTGAAATCAGGTGCATGTCCATTCAAAGGAGCTCCGCATAAATCAAAAAGAATGAAGGAAGGAAAAGATAAAATGAATGACGAGAAACCTGCGCTTACAAATGTTCCATTGGAGAATGGTCATTTTCAAATATGTTTTGATTCTGAATATAAACTAAAAAGAGTGGAATTTCCTAGAAAAATGCTTAAAATGAAAATAAAGCTGCTTCGGAGTATAACTCTCAGGGACGAGAATGGCAAGTCATGGCTGGTGTCGATCAATTCCTCATTGGATCATGATCGTAAATATTTGGGAAATGGATGGACGGCTTTCAAGGAGAGTAAAAACATTCAACTAGGGTCTCGATTTGATTTTCAGTTTGTTGTCGACAAAGCAAATGTGGCCAGAGAACTGCTTGTGCGCGTGCTTTCGAAGGCAAAGAACAAATAG 873 0.3872 MENAGGDKIACEFFKVFLRNRGSTQLQIPRSFTKFFTGITPCKVVLVEQDGKHWDVKVEKIEGGLVFKSGWQEFAKEKNLEDCDFLVFEYDGKTSFNVKIFGKTGCRKVAAPPKVVPIVNLEEDSDEHSHEIQSNGVRKRPLPSPKTNVKSGACPFKGAPHKSKRMKEGKDKMNDEKPALTNVPLENGHFQICFDSEYKLKRVEFPRKMLKMKIKLLRSITLRDENGKSWLVSINSSLDHDRKYLGNGWTAFKESKNIQLGSRFDFQFVVDKANVARELLVRVLSKAKNK 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01694 290 PANTHER B3 DOMAIN-CONTAINING 7 271 - -
Vimu2g01694 290 CDD B3_DNA 195 270 IPR003340 GO:0003677
Vimu2g01694 290 CDD B3_DNA 13 101 IPR003340 GO:0003677
Vimu2g01694 290 SUPERFAMILY DNA-binding pseudobarrel domain 194 269 IPR015300 -
Vimu2g01694 290 ProSiteProfiles B3 DNA-binding domain profile. 218 287 IPR003340 GO:0003677
Vimu2g01694 290 Gene3D - 185 284 IPR015300 -
Vimu2g01694 290 Gene3D - 6 106 IPR015300 -
Vimu2g01694 290 MobiDBLite consensus disorder prediction 126 175 - -
Vimu2g01694 290 MobiDBLite consensus disorder prediction 161 175 - -
Vimu2g01694 290 SUPERFAMILY DNA-binding pseudobarrel domain 13 106 IPR015300 -
Vimu2g01694 290 ProSiteProfiles B3 DNA-binding domain profile. 11 104 IPR003340 GO:0003677
Vimu2g01694 290 Pfam B3 DNA binding domain 196 284 IPR003340 GO:0003677
Vimu2g01694 290 Pfam B3 DNA binding domain 13 103 IPR003340 GO:0003677
Vimu2g01694 290 SMART B3_2 190 287 IPR003340 GO:0003677
Vimu2g01694 290 SMART B3_2 13 104 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01694 12 285 B3 DNA Binding Superfamily AT5G66980 29.712 7.71e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu2g01694 B3 1.2e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01694 - - var:108345771 488.034