Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01686 ATGAGATTATTGTTTACAGTATACACTCCCAAACAAATTCATTCTATAAAACCTGCAACAAATAACTTGAGTATCATAGAACCTTGGCGTTGCGGAGGGTCATCCATGGAGTTTCCGCCGAACCTTTTGCCAGACGAAGCGAGCCCAGAATGGTTAAACAAAGGAGACAATGCGTGGCAGTTAATGGCAGCAACGGTGGTGGGTCTACAAAGCATTCCAGGGCTGGTTATTCTCTACGGAAGCCTCGTCAAAAAAACATGGGCCATTAACTCCGCTTTCATGGCCTTCTACGCCTTCGCGGCGGTTCTTCTCTGCTGGGTTGCGTGGGGTTTCCGCATGTCATTCGGTGAGAAAATGCTGTTCTTCTTGGGGAAACCAGGGGTGGCTCTGGACCAGGAGTTTCTTCTGGGGAAAGCGTTTCTGGGGCTCTTTCCCACCGCTACCATGGTGTTTTTCCAGGGCGTGTTCGCGGCGATTACTTTGATCCTCATAGCTGGGGCGTTGCTCGGGAGAATGAACATCCTTGCGTGGATGCTGTTTGTTCCTCTTTGGGTTACTTTTTCGTACACGGTCACTGCGTTCAGCATCTGGTCCCCCGAAGGATGGTTGGCGAAGCTTGGAGTTATTGATTTCTCCGGTGGATATGTCATTCACCTCTCTGCCGGAGTTGCCGGTTATACTGCAGCTTATTGGGTGGGTCCAAGATGTGAGAAGGAGAGAGAAAGGTTTCCATCAAACAACATGATTGTAGGGCTCGCCGGCGCCGGCCTGCTTTGGATGGGTTGGAGTGGGTTCAACGGTGGTGGCCCGTTCGTGGTGAGCACGGTGGCTTCTCTGGCCGTCCTTAACACACACGTGTGTGCCGCCGCCAGCATCATGGTGTGGGTTCTACTTGACACTTTATACTTTGGTAAGCCCACCGTGTTTGGCGCCATACAAGGCATGATCACCGGCCTCGTTTGCATCACGCCTGCCGCAGGAGTTGTGCAGGGGTGGGCAGCGATATTGATGGGTTTGATCTCAGGAAGCGTTCCCTGGTACACAATGATGATCCTCCATAACAAGGTACCCTTCTTGAAACAAATCGACGACCCCATGGCGGTTTTCCACACCCACGCCGTCGCCGGTGCTCTCGGAGGAATCCTCACCGGGCTCTTCGCCGTCCCTAAACTCTGCCGTCTCTTCTACATGGTCCCAGATTGGGAAAAATACATTGGCCTGGCCTATGGCCTCCAGAACGGTGCAACTGGAGCGGGTTTAAGACAAATGGGCATCCAAATCGGAGCCATAGTTTTCGTCATCATCTTCAACTTCGTTACTACAAGCTTGATTTGCTTGCTGGTGGGGGTCTTGGTACCTCTCAGACTTCACACCGATGCGCTGCAAATGGGTGACAAGGCAATGCATGGAGAAGAGGCTTTCGCTTTGAATAATGCTGACAATGCCATGTTTGAGAATCTCAACCACAACAATGTTTATGATACTCAAGACTTTTCCTTCTTTAGAGACCCAAAACCATTGACTCAACTTCAAATGGTATGA 1542 0.5091 MRLLFTVYTPKQIHSIKPATNNLSIIEPWRCGGSSMEFPPNLLPDEASPEWLNKGDNAWQLMAATVVGLQSIPGLVILYGSLVKKTWAINSAFMAFYAFAAVLLCWVAWGFRMSFGEKMLFFLGKPGVALDQEFLLGKAFLGLFPTATMVFFQGVFAAITLILIAGALLGRMNILAWMLFVPLWVTFSYTVTAFSIWSPEGWLAKLGVIDFSGGYVIHLSAGVAGYTAAYWVGPRCEKERERFPSNNMIVGLAGAGLLWMGWSGFNGGGPFVVSTVASLAVLNTHVCAAASIMVWVLLDTLYFGKPTVFGAIQGMITGLVCITPAAGVVQGWAAILMGLISGSVPWYTMMILHNKVPFLKQIDDPMAVFHTHAVAGALGGILTGLFAVPKLCRLFYMVPDWEKYIGLAYGLQNGATGAGLRQMGIQIGAIVFVIIFNFVTTSLICLLVGVLVPLRLHTDALQMGDKAMHGEEAFALNNADNAMFENLNHNNVYDTQDFSFFRDPKPLTQLQMV 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01686 513 PANTHER AMMONIUM TRANSPORTER MEP2 41 481 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vimu2g01686 513 Pfam Ammonium Transporter Family 58 473 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vimu2g01686 513 SUPERFAMILY Ammonium transporter 51 456 - -
Vimu2g01686 513 Gene3D Ammonium transporter AmtB like domains 43 492 IPR029020 -
Vimu2g01686 513 NCBIfam ammonium transporter 56 473 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vimu2g01686 513 ProSitePatterns Sodium:solute symporter family signature 2. 300 320 IPR018212 -
Vimu2g01686 513 PRINTS Rhesus blood group protein signature 335 353 IPR002229 GO:0005886
Vimu2g01686 513 PRINTS Rhesus blood group protein signature 153 169 IPR002229 GO:0005886
Vimu2g01686 513 PRINTS Rhesus blood group protein signature 280 302 IPR002229 GO:0005886
Vimu2g01686 513 PRINTS Rhesus blood group protein signature 249 267 IPR002229 GO:0005886
Vimu2g01686 513 FunFam Ammonium transporter 41 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01686 Vimu-Chr2 12051492 12053205 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01686 147 497 Inorganic Solute Cotransporters AT2G38290 54.701 2.47e-124 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01686 K03320 - gmx:100782944 861.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01686 2 12051492 12053205 Vimu2g01686 2 12051492 12053205 ECH