Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01683 ATGGAAAGGGTGTTGTCAGTGGATGAAATATCGGAGCAATATTGGGTGGCGGCGAAGAAGGAATCATGCAAGTCAAAGTCAAAGATGAACCGTAGTGAATCGGAATGGGCCTTTCAGCAGTTTCTTCAGGAAGCAGTTTCTCCTTCTTCATCTTCTTCCTCCGACGTTAAACCCAAAAAGGATCCCGACATCACCATGAACATCCCTGTTACTCTAAATGTCGATTCCCACGATTACCAAACCATTCTTAAAACCAAGCTTAACCTCGCTTGTGCTGCTGTCGCTTTGTCTCGGGGATCTTTGGTCAAATCTCAAAATCCGACCACTTTCCCTGACAGTGGATCTGTTCCTTCTGAAGTTGGAACCTTGAAAGATGTGAAAGCAGCAACTGGGATTTCATTCTCATCACCTTCCCTGCAAAAGAAAGCTGGTGTTGCAGTGAGGCCAACATTAAGTGCATCATCAAGAGAGCAATCAGATGATGAGGAAGCGGAGGAAGAGATTAACATGACTGGAAATATGAATCCAACTGATGCAAAACGAGTAAGGAGGATGCTTTCTAATAGGGAGTCTGCTAGACGCTCAAGGAGAAGAAAGCAGGCTCATTTAACTGAGCTGGAGACACAGGTCTCCCAATTAAGAGGTGAAAATTCTTCCTTGTTAAAGCGCTTAACTGACGTGAATCAGAGATACAACAGTGCTGCAGTTGACAACAGAGTATTGAAAGCTGATGTTGAAACGTTAAGAGCTAAGGTGAAGATGGCTGAAGAGACAGTGAAAAGAATTTCTGGGTTGAATCCAATGTTTCATGCCATGAGTGAGATGTCATCAATGGAAATAGCAATGTTTGATGAAAGTCCTTCTGAGACATCAGGTGTTGCTGCTGTTCCTGTGCAAGAAGATCGAAATCATAAACTTTGTGAAGGCATTTCTTCAGTGAAAAGTGTGCAGCAGAATGTTACAGCAATGGTAGGTTGGAAGAAAAGTGGGGGAGGAAATTCCCTGCATAGAGTTGCTAGCTTGGAACATCTTCAGAAGCGGATTCGTGGTGATGAAGATTCACGTGGAGAGCAATAA 1077 0.4355 MERVLSVDEISEQYWVAAKKESCKSKSKMNRSESEWAFQQFLQEAVSPSSSSSSDVKPKKDPDITMNIPVTLNVDSHDYQTILKTKLNLACAAVALSRGSLVKSQNPTTFPDSGSVPSEVGTLKDVKAATGISFSSPSLQKKAGVAVRPTLSASSREQSDDEEAEEEINMTGNMNPTDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRGENSSLLKRLTDVNQRYNSAAVDNRVLKADVETLRAKVKMAEETVKRISGLNPMFHAMSEMSSMEIAMFDESPSETSGVAAVPVQEDRNHKLCEGISSVKSVQQNVTAMVGWKKSGGGNSLHRVASLEHLQKRIRGDEDSRGEQ 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01683 358 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 183 198 IPR004827 GO:0003700|GO:0006355
Vimu2g01683 358 Pfam bZIP transcription factor 179 231 IPR004827 GO:0003700|GO:0006355
Vimu2g01683 358 MobiDBLite consensus disorder prediction 143 182 - -
Vimu2g01683 358 Coils Coil 189 223 - -
Vimu2g01683 358 Coils Coil 238 258 - -
Vimu2g01683 358 FunFam BZIP transcription factor 178 229 - -
Vimu2g01683 358 PANTHER BASIC LEUCINE ZIPPER 63 1 352 - -
Vimu2g01683 358 SMART brlzneu 176 240 IPR004827 GO:0003700|GO:0006355
Vimu2g01683 358 Pfam Basic leucine-zipper C terminal 247 351 IPR020983 -
Vimu2g01683 358 CDD bZIP_plant_GBF1 181 232 IPR045314 GO:0003700|GO:0006355
Vimu2g01683 358 SUPERFAMILY Leucine zipper domain 180 230 IPR046347 GO:0003700|GO:0006355
Vimu2g01683 358 Gene3D - 179 234 - -
Vimu2g01683 358 MobiDBLite consensus disorder prediction 44 63 - -
Vimu2g01683 358 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 178 232 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01683 Vimu-Chr2 12032896 12034673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01683 1 269 bZIP Transcription Factor Family AT4G02640 41.558 4.20e-51 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu2g01683 bZIP_C 1.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01683 K25784 - gmx:778137 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01683 2 12032896 12034673 Vimu2g01683 2 12032896 12034673 ECH
Vimu2g01683 2 12032896 12034673 Vimu3g02189 3 36661290 36667468 PCT