Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01677 ATGACTACTGCTATGGAGGTAGAGCGTGACAAGTACAAGATGATCGATTTCGAAGAAACCGAGTTGCGACTCGGGTTGCCGCTGAGTTCAAGCGACGGCGAGTCCACGCTCATCAGAAACACTTCCGGTGGTGGTTCCTTTACCGGGAAGAGAGGGTTTTCCGATACAAGCAGCGGTAGCGTGGATTTGAAGCTTAACCTTTCCTCAACCTCAAACAATGTCTCCGCCTCTTCCTCTTCTGACATGGCCAAAGAGAACAACGCTTCTGCAGCTGCTAACATCACCACACCTCCTTCTCCTCCTCCTGTCAAGGACCCGGCAAAGCCACCTGCAAAGGCACAAGTGGTGGGTTGGCCTCCTGTGAGATCATTCAGAAAGAACATCGTGAACAATGTTCAAAAGGGTAGCAGCAGCAGCAACAAAGAGGGGGTAAAAGGTGGCACAAATAGCAGCAGCAGTGGGAACACAGGAGCAGCTTTTGTTAAGGTGAGCATGGACGGTGCTCCATATCTACGTAAGGTAGATTTGAAGGTGTACAAGAGCTACCAAGAGCTGTCAGATTCCCTTGCAAAAATGTTCAGTTCATTCACCATCGACAAGTGTGGATCCCAAGGCATGAAAGACTTCATGAACGAGACCAAATTGATTGATTTTCTCAACGGCTCTGATTACGTTCCCACCTATGAAGACAAAGATGGAGACTGGATGCTCGTCGGTGACGTACCCTGGGAAATGTTCGTGGAATCCTGCAAGCGTCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGCACCGAGAGCAGTGGAAAAGTGCAGGAACAGAAGCTAG 831 0.4946 MTTAMEVERDKYKMIDFEETELRLGLPLSSSDGESTLIRNTSGGGSFTGKRGFSDTSSGSVDLKLNLSSTSNNVSASSSSDMAKENNASAAANITTPPSPPPVKDPAKPPAKAQVVGWPPVRSFRKNIVNNVQKGSSSSNKEGVKGGTNSSSSGNTGAAFVKVSMDGAPYLRKVDLKVYKSYQELSDSLAKMFSSFTIDKCGSQGMKDFMNETKLIDFLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCRNRS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01677 276 SUPERFAMILY CAD & PB1 domains 149 257 - -
Vimu2g01677 276 FunFam Auxin-responsive protein 153 268 - -
Vimu2g01677 276 MobiDBLite consensus disorder prediction 131 156 - -
Vimu2g01677 276 MobiDBLite consensus disorder prediction 27 115 - -
Vimu2g01677 276 Gene3D - 153 270 - -
Vimu2g01677 276 ProSiteProfiles PB1 domain profile. 158 258 IPR000270 GO:0005515
Vimu2g01677 276 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 263 IPR003311 GO:0005634|GO:0006355
Vimu2g01677 276 MobiDBLite consensus disorder prediction 29 94 - -
Vimu2g01677 276 Pfam AUX/IAA family 19 267 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01677 Vimu-Chr2 11989770 11991819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01677 126 266 B3 DNA Binding Superfamily AT4G23980 29.078 1.03e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vimu2g01677 AUX_IAA 7.6e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01677 K14484 - gmx:100796888 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01677 2 11989770 11991819 Vimu2g01677 2 11989770 11991819 ECH