Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01671 ATGCGTTTCGGTCAAAAAGGTCCCTTGTTTCTTGTTTGTGTTCTTGTTTTGTTGAAAGGCATTCGTGGTGCATGGAATGAGGAGCCAGGGTCTTTGATCTTGGGTTGCGGATTGGATGAAGGTGCTGAAGATGCTGACGGAAGAAGATGGAGTTCTGATAAAAAGTTCTTGGGGACAGAAGGTGATTCAATCACATCCAAAGCCTCTTACCAAGACCCTTCTCTTACGTCTGAGATTCCATACATGTCAGCACGCATTTTCAAATCTGAGACAACATACAAATTCCCCGTTAAACCTGACAAGCGTTATTGGCTCAGGCTCCATTTTTACCCCTCTCTTTATGCCAGTTTTGATACCTATAACTCATATTTCTCCGTGGATGCAAATGGGGTTACCCTCCTCACCAATTTCAGCGCCTCAGTGACCTGTGAGGCCCTATCACTAGCTTACATTGATAGAGAGTATTCCCTTGCTCCTTTGAATTCAGATACCTTGACTCTCACTTTCAGGCCTTCTGATAAATACGACGGTGCATTCGCTTTTGTTAATGGCATTCAGCTTATCCAAATGCCCGATTTGTTTGATTCTGCAACAGTGATAGGGTTTGATGGCCAAACCATGGATATGACAAACTCGAATTTTCAGACCATGTTTAGATTAAATGTCGGGGGGCAGTTCATATCTCCAGTCCAAGATTCTGGACTCACAAGGATGTGGTACGATGATACACCTTATATTTATGGGGCAGCCACTGGTGTGACGAACAAAGCTGAGAAGAATGTGACAATCAACTATCAGGGCATGCCAGAGTATATTGCTCCTGTTGATGTCTACTCCACATCTAGATCCATGGGGGGAAATAAAGATCTCAACATGGGCTACAATCTCACTTGGATGTTCCATGTTGATACCGATTCCATGTACCTTGTAAGGTTGCATTTCTGTGATTACTACTTCTCCAAGATGAATGAGATTGTGTTCAAAATCTTTGTGAACAACCAAACTGCACAAGATCTATCCGATGTGATTGGGTGGACCGGAGGCATAGGAGTGCCAACTTATAAGGACTACGTGATATATGTTGAAGGTGGAAAGAGTAATGAGTTGCTATGGCTCGCACTTCACCCCGACCCTGAGACAAAGCCTGAGTTCTACGATGCCATACTTAATGGAGTGGAGATATTCAAGATCAACGAGACAGACTTATCTGCTCCCAATCCTCTGGTTTCAGACATGCTCCTCAAACAGCACCAGGAGGAGGAAGCGGGTTTCTTCGTCCACAAAACAAGTCATCATCATGCTGTTATCGGTGGAGCTGCAGGAGGTGCTGCTGGTCTTGCTTTTATGGCTGTATTATGTGTTGCTGTGTACAACAAGAAGAAGAAAGAACCAGGGTCAGAGGGTCAAACTAGCTGGCTTCCCATGTATTCGACCTCAAGCTGTAGCAAATCTAGCAAGTCTGGAAAGAGCATGTGCAGTTCCACCTTATCTGCCATGTCTCAAGGTCTTTGCCGCTATTTCTCCTTGCAAGAGATAACGCAAGCAACCAATAATTTTGATGAGTCTAACGTCATTGGGGTTGGTGGATTTGGAAAGGTTTACAAGGGTGTCATTGATAATGGAGTGAAGGTGGCAATCAAGAGGTCCAACCCACAGTCAGAACAAGGAGTTAATGAATTCCAAACGGAAATTGAGATGCTTTCCAAGCTGAGACACAAGCATTTGGTGTCCTTGATTGGTTTCTGCGAGGAACATAATGAGATGTGCTTGGTTTATGACTACATGGCTCTTGGCACCATGAGGGAGCATCTTTACAAGGGCAACAAACCTATCTCTACTCTGTCATGGAAGCAAAGGTTGGAGATTTGCATTGGAGCTGCAAAAGGGCTTCACTACCTTCACACTGGGGCAAAGTACACCATCATTCACAGAGATGTCAAAACAACAAACATTCTCTTGGATGAAAACTGGAATGCCAAGGTTTCAGATTTTGGCTTGTCAAAAACTGGTCCAAATATGAGCAATGGTCATGTTAGCACTGTGGTGAAGGGTAGTTTTGGCTACTTGGACCCTGAATACTTCAGGAGGCAACAGTTGACGGAAAAATCTGATGTTTACTCATTTGGGGTTGTTCTGTTTGAAGCCCTGTGTGCCCGGCCTGTTCTC 2166 0.4432 MRFGQKGPLFLVCVLVLLKGIRGAWNEEPGSLILGCGLDEGAEDADGRRWSSDKKFLGTEGDSITSKASYQDPSLTSEIPYMSARIFKSETTYKFPVKPDKRYWLRLHFYPSLYASFDTYNSYFSVDANGVTLLTNFSASVTCEALSLAYIDREYSLAPLNSDTLTLTFRPSDKYDGAFAFVNGIQLIQMPDLFDSATVIGFDGQTMDMTNSNFQTMFRLNVGGQFISPVQDSGLTRMWYDDTPYIYGAATGVTNKAEKNVTINYQGMPEYIAPVDVYSTSRSMGGNKDLNMGYNLTWMFHVDTDSMYLVRLHFCDYYFSKMNEIVFKIFVNNQTAQDLSDVIGWTGGIGVPTYKDYVIYVEGGKSNELLWLALHPDPETKPEFYDAILNGVEIFKINETDLSAPNPLVSDMLLKQHQEEEAGFFVHKTSHHHAVIGGAAGGAAGLAFMAVLCVAVYNKKKKEPGSEGQTSWLPMYSTSSCSKSSKSGKSMCSSTLSAMSQGLCRYFSLQEITQATNNFDESNVIGVGGFGKVYKGVIDNGVKVAIKRSNPQSEQGVNEFQTEIEMLSKLRHKHLVSLIGFCEEHNEMCLVYDYMALGTMREHLYKGNKPISTLSWKQRLEICIGAAKGLHYLHTGAKYTIIHRDVKTTNILLDENWNAKVSDFGLSKTGPNMSNGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEALCARPVL 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01671 722 Gene3D - 213 398 - -
Vimu2g01671 722 Gene3D - 33 191 - -
Vimu2g01671 722 ProSiteProfiles Protein kinase domain profile. 519 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01671 722 Pfam Protein tyrosine and serine/threonine kinase 523 717 IPR001245 GO:0004672|GO:0006468
Vimu2g01671 722 Gene3D Phosphorylase Kinase; domain 1 477 594 - -
Vimu2g01671 722 FunFam receptor-like protein kinase FERONIA 481 594 - -
Vimu2g01671 722 Pfam Malectin-like domain 35 397 IPR024788 -
Vimu2g01671 722 Gene3D Transferase(Phosphotransferase) domain 1 595 722 - -
Vimu2g01671 722 SMART serkin_6 519 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01671 722 SUPERFAMILY Protein kinase-like (PK-like) 493 720 IPR011009 -
Vimu2g01671 722 ProSitePatterns Serine/Threonine protein kinases active-site signature. 641 653 IPR008271 GO:0004672|GO:0006468
Vimu2g01671 722 ProSitePatterns Protein kinases ATP-binding region signature. 525 547 IPR017441 GO:0005524
Vimu2g01671 722 FunFam FERONIA receptor-like kinase 31 191 - -
Vimu2g01671 722 FunFam Os07g0541700 protein 599 684 - -
Vimu2g01671 722 FunFam FERONIA receptor-like kinase 212 398 - -
Vimu2g01671 722 PANTHER OS03G0124300 PROTEIN-RELATED 29 469 IPR046957 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01671 Vimu-Chr2 11947244 11949752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01671 32 722 Receptor kinase-like Gene Family AT3G51550 53.814 0.0 722
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu2g01671 Malectin_like 1.8e-34 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01671 - - gmx:102659961 1158.67