Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01664 ATGATTTCGTCAATTTCATGGATACCAAAAGGAGTATCAAAACCAGTTCTCTTGGTAGACGATCCTTCTCAAGAAGAGGATCTTGAAGAAAATATCCCTCTCCAATCAAGTGAGAGTACGAATAAAGATGAAGATGTGGTGGATTTGAAGTCATTGCCAGTAAATAATGTAGTACGTGACAACATAATCCAAGCCTTGAAAGACCTTCACATGGAACGTTATGATGATGAGGATGAAACCAGTGATCTGTACTATCCACACAACAACATGGATCCATATCTCAAAGATCAAAATGATTCTGATTCTGAGGAACTTGAAAACATGACCATTTATCCAACCGATTCTGTCATTGTTTGTGCACGTACTCGCGTGAAAAAGGTTGAAGGTAGTGATAACGAGGATAGTTTTGGTGTTGTTGAGGTTTGGATACGTGAGGATAGAGAAAAGAACATGTTTCTTCACCATGTCATTGAAATTTCAGCATTGCCGCTTTGCACGGCTTGGCTTGATTGTCCCCTCCAAGGAGGAGAGAGAGGGAACTTCTTAGCTGTTGGATCAATGGAACCTAATATTGAAATTTTTAACGTTGACGTTATTACAAGGGATGGAAAGGGAAAGCCATGTATGGTGTTGGGTAGCACTGAAGATGTGAAAAAGAAAGGAAAACTGAAATCAACCAAATACAAAAATGATGGCCACAGTGACTCTGTACTTGGTCTTGCATGGAACAAAGAGTACAGGAATATAATTGCAAGTGCGAGTGCTGACAAGAAAGTGAAGATTTGGGATGTTGTCAGTGGGAAGTGTGAAATTACGATGGGCCATCACACAAAGGAGGTTCAAGCTGTTGCTTGGAATCACCATTCACCATGGGTTCTTCTTACTGGTTCGTTTGATGGTACTGTTTTTCTGAAGGACGGGAGGATCCCATCACATGATGGTTGTAAGTGGAAACTCAATGCTAAAGTAGAGAGCTTGGCATGGGATCCACACTCTGAGCACTCTTTTGTGGTGAGTCTTGAAAATGGTACGGTTAGATTAATTGATGTTCGGACTGCCAAGTCAGATTCCACTGAGCTCAGGGCTACTTCAACCATTGAAGCACATAATAACAAAGCTTGTACATCAGTATCCTACAATCTGTCAGCTCCTAATCTTCTCGCTACTGGATCGGAGGACGAAACGGTAACAGTGAAAGCACTTCCGTTGTTTGTGTATAGTGCTGGTGCTGTAAAGCTTTGGGATTTGTCACACAACCAACCTTCTTGTGTGGCCTCTTATTCTCCAGAAGTAGGGTCTGTCTATTCTGTTTCATTCTCGGAAGACAACCCTTTTTTGTTGGCTATAGGAGGCTCAAAGGGAAATTTACGAGTATGGGACACTCAATCGTATTCTGGAATTTCTCAAAAATATGGGAACTACATGAAGTAA 1431 0.4137 MISSISWIPKGVSKPVLLVDDPSQEEDLEENIPLQSSESTNKDEDVVDLKSLPVNNVVRDNIIQALKDLHMERYDDEDETSDLYYPHNNMDPYLKDQNDSDSEELENMTIYPTDSVIVCARTRVKKVEGSDNEDSFGVVEVWIREDREKNMFLHHVIEISALPLCTAWLDCPLQGGERGNFLAVGSMEPNIEIFNVDVITRDGKGKPCMVLGSTEDVKKKGKLKSTKYKNDGHSDSVLGLAWNKEYRNIIASASADKKVKIWDVVSGKCEITMGHHTKEVQAVAWNHHSPWVLLTGSFDGTVFLKDGRIPSHDGCKWKLNAKVESLAWDPHSEHSFVVSLENGTVRLIDVRTAKSDSTELRATSTIEAHNNKACTSVSYNLSAPNLLATGSEDETVTVKALPLFVYSAGAVKLWDLSHNQPSCVASYSPEVGSVYSVSFSEDNPFLLAIGGSKGNLRVWDTQSYSGISQKYGNYMK 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01664 476 MobiDBLite consensus disorder prediction 23 44 - -
Vimu2g01664 476 ProSiteProfiles Trp-Asp (WD) repeats profile. 427 469 IPR001680 GO:0005515
Vimu2g01664 476 ProSitePatterns Trp-Asp (WD) repeats signature. 250 264 IPR019775 -
Vimu2g01664 476 Pfam WD domain, G-beta repeat 268 303 IPR001680 GO:0005515
Vimu2g01664 476 Pfam WD domain, G-beta repeat 231 263 IPR001680 GO:0005515
Vimu2g01664 476 Pfam WD domain, G-beta repeat 423 460 IPR001680 GO:0005515
Vimu2g01664 476 Gene3D - 309 469 IPR015943 GO:0005515
Vimu2g01664 476 SMART WD40_4 312 349 IPR001680 GO:0005515
Vimu2g01664 476 SMART WD40_4 220 263 IPR001680 GO:0005515
Vimu2g01664 476 SMART WD40_4 359 415 IPR001680 GO:0005515
Vimu2g01664 476 SMART WD40_4 420 460 IPR001680 GO:0005515
Vimu2g01664 476 SMART WD40_4 266 306 IPR001680 GO:0005515
Vimu2g01664 476 SUPERFAMILY WD40 repeat-like 160 462 IPR036322 GO:0005515
Vimu2g01664 476 Gene3D - 27 308 IPR015943 GO:0005515
Vimu2g01664 476 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 272 IPR001680 GO:0005515
Vimu2g01664 476 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 23 473 IPR044285 GO:0006364
Vimu2g01664 476 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 230 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01664 Vimu-Chr2 11890593 11893281 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01664 247 462 U-box Gene Family AT2G33340 26.009 8.28e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01664 K14791 - gmx:100807947 561.992