Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01656 ATGATGTTTTCTTATCTCCATCTGCAGGGGAATCCAGTGAATATTACTGTGGGTTCTCATGTCTGGGTTGAAGATCCAGATGTATCTTGGATTGATGGACAGGTATCAAATATCAAGGGAAAGGATGCTGAAATTCATACAATCAATGGAAAGAAGGTTTGTGCTTATTTTGCATTCTTGAATAAGTTCCATACGGTGGTCACAAAGTTATCAAAAATATATCCCAAAGATATGGAAGCTCCTGCAGGTGGAGTGGATGATATGACTAAGCTTTCATATTTGCATGAGCCCGGAGTCCTGCAGAACTTAAAAACTAGATATGAATTGAATGAAATATATACTTATACAGGTAATATTCTGATTGCAATAAATCCATTCCAAAGGCTACCTCATATTTATGATTCCCACATGATGGAACAATACAAGGGAGCACCACTTGGAGAGTTAAGTCCTCATGTATTTGCCATTGCTGATGTTGCATATAGGGCAATGATTCACGAAGGAAAAAGCAATTCGATTTTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGAGATATCTTGCCTTCTTAGGTGGTAGGGCTGCCACTGAAGGTCGAACTGTTGAGCAACAAGTTCTTGAATGCAGTCAAATCCAGTTCTGGAAGCATTTGGCAATGCTAAAACTGTCAGGAATAACAATTCCAGGCAATCGTTTTGGTAAATTTGTCGAGATCCAATTTGACAAGAGTGGTAGAATCTCGGGAGCAGCCATTCGAACATACCTTCTGGAGAGATCTCGGGTCTGCCAGATTAATGATCCTGAACGCAACTACCACTGCTTTTATTTTCTTTGTGCTGCACCCCAGGAGGAAATTGATAAATACAAATTAGGAAGTCCTACAACATTTCATTACCTTAACCAGTCAAAATGCTATGACCTGGCTGATATAAGTGATTCTCGTGAGTATCTTGCTACCAGGAGAGCTATGGATATTGTTGGAATAAGCCAAAAAGAACAGGAAGCAATTTTCAGAGTTGTTGCTGCGATTCTTCATATAGGGAATATTGATTTTGCAAAAGGCATGGAAGTTGATTCATCAGTTCCAAAAGATGATAAAGCCAAGTTCCACTTAAAAACTACTGCTGAGCTTCTTATGTGCGATGCTGGTTCCTTGGAAGATGCATTATGCAAGCGTGTCATGATCACCCCTGAGGAAGTTATAAAACGAAGCCTTGATCCAGAAAGTGCAGCAGTCAGCAGAGATGGCTTGGCAAAAACAATTTATTCTAGGCTCTTTGACTGGTTGGTGAACAAGATTAATAATTCAATTGGACAGGACTCCAGTTCTAAATCTTTGATTGGGGTGCTTGATATCTATGGTTTTGAAAGCTTTAAATCTAACAGTTTTGAGCAGTTCTGCATTAATTTCACAAATGAGAAGCTGCAGCAACATTTCAATCAGGCAACGTCTCAGACCATGATAAGCACTTATCACGTGTTTAAGATGGAGCAAGAAGAATACACGAAGGAGCGGATCAATTGGAGCTACATTGAATTTGTTGACAACCAAGATGTCTTGGACCTTATTGAAAAGAAACCTGGAGGAATAATTGCACTCCTTGATGAGGCTTGTATGTTTCCAAAGTCCACACATGAAACATTTTCAAACAAACTTTATCAGACATTTAAGAATCACAAACGCTTTGTTAAGCCAAAATTGTCTCGAACAAATTTCATTATCTCTCATTATGCTGGCGAGGTGCACTACCAGTCTGATCACTTTTTAGACAAAAACAAAGATTATGTGGTTGCTGAGCATCAAGATTTATTGAGTGCTTCCAATTGTCCATTTGTAGCAGGCCTTTTTCCTCCACTTCCAGAGGAGACATCCAAATCCTCTAAATTTTCTTCAATTGGTTCTCGATTTAAGCTGCAACTACAGCAATTAATGGAAACACTAAGCTCTACACAGCCTCATTACGTTAGATGTGTGAAACCAAACAACCTCCTCAAGCCTGCAATTTTTGAGAATTCCAATGTCATGCAGCAACTTCGCTGTGGTGTGAGTATGGGTGTTTTAGAGGCAATCAGAATCAGTTGTGCTGGCTACCCTACGCGCCGTGCTTTCTTTGAATTTATAAATCGATTTTCCCTTCTTGCTCCAGAGATCACAGAAATACATCATGATGAGAAGACTGTTTGCCAAAAGATTCTGGAAAAAGCAGGGCTTAAAGGATATCAGATTGGACAAACAAAGGTTTTCCTAAGAGCTGGTCAGATGGCTGAACTAGATGCACGGAGAGCTCAAATGCTTGGTAACGCAGCAAAAACTATTCAACGGCGTATACGAACCCATCAAGCTCGTAAACATTATCTTGCACTACGCAAGAACACTACAATTATGCAGGCTCTTTGGAGAGGAAGACTTGCATTCAAATTTTATAACAAATTGAGAAGGGATGCAGCTGCAGTGAAAATTCAGAAGAATATACGAAGATATGAATCTATGAAATCCTACACTAAACTCAAAGCATCAGTACTTATTGTGCAAACGGCTTTAAGGGCAATTGCTTCCCATAAGGAGTTCAGATTTAGGAAACAGGCTAAGGCTTCCATCATTATTCAGGCTCAGTGGCGGTGCCACAAAGCTGCTTCATATTATAAGAAGCTCAAGAAAGGTTCAATTGTCACCCAATGCCGATGGAGGGGTATCATGGCCAGGAGAGAACTTAGGAAACTGAAAATGGCTGCAAGAGAAACTGGTGCACTTAAAGAGGCAAAGGACAAGCTTGAAAAAAGAGTGGAGGAACTCACTTGGCGTCTTCAACTAGAAAAAAGTTTAAGGAGCAACCTAGAAGAATCCAAAGCACAAGAGATAGCAAAACTGCAGAATTTACTGCAGGAGACGCAGAACAAATTTGATGAAACCAATGCATTACTTATAAAGGAGCGTGAGGCTGCAAAGAAAGCTATTGATGAAGCACCCCCTGTTGTTAAAGAAACACAGGTTATTGTTGAAGACACTCAGAAGATTGAATCACTAACAGTGGAAATTGAGATTCTAAAGAACATCTTGCACACTTCTGATTTCTCTGTTTTGTTCCGCTGCTGTCACCATCATCACCCAAAGCTCACAGATCTGGATCTAGCATCAAGGCTGGATGCTATAACAGCCCATGTGAGCTCCTTGCTTTTTATTCCTCCTTCACGTGCTATCGTTGCTGGATTTCGAACCGTGACCTCTCTCGATGCTACTGCTATTACTTCTGCGTCACCACTTTCTTGGATGTTTTTGGTCCTTCTTTCATCCGCCGTGTCTGCTGCCGTTGTCTGCAGCCTCTGTTCGCAGCCACTTTCCGTAGCCACTAGCTCCCTTGAGTCAGAGAAACAGAAAGCTGATGACTTTGAAATGAAATATAAAGAGTCCCAAGCTTATTGTGAAGAAAAGAGTAAATTATTAGAAGACACAGAGAAGAAGGTTCGTCAGCTACAAGAATCCATGACCAGGCTAGAAGAGAAAGTTGCTAATTCAGAATCAGAGAATCAAGTTCTACGTCAACAAGCTGTGTCAATGGCACCCAATAAGTTCCTCTCAGGACGCTCTAGATCCGTTATACAGCGACCAGATGGTGGACATATTGGAACGGAAGCAAAGTCAACTTCGGATATGCATAGCACATCAATGAACCATAGGGAACATTCTGAAGTGGATGATAAACCACAGAAGTCACTTAATGAGAAACAACAGGAGAATCAAGAGTTACTCATTAGAAGCATTCAACAAAACCTAGGATTTTCTGGGAATAGACCAGTTGCTGCTTGTATCATATACAAATGCCTCTTGCATTGGAGATCATTTGAAGTGGACCGTACTAGCGTTTTTGATCGTCTAATCCAAACAGTTGGTCACGCAGTTGAGACGCAAGATAATAATGATGTCTTGGCTTATTGGTTATCCAATGCCTCTACACTGGTCTTGTTACTACAGCGCACACTAAAGGCAAGTGGTGCAGCTGGAATGGCTCCTCAACGTCGTCGATCTTCGTCAGGGAGTCTGTTCGGGAGGGTGACACATAGTTTCCGTGGAACTCCAGCAGGAGTCACCCTTCCCCTAATCAATGGTAGCATGAGCGGTGTAGATACGCTAAAAGTTGAAGCCAAGTACCCTGCTCTCCTTTTCAAACAGCAGCTTACAGCTTATGTGGAAAAGATATATGGAATGATTCGAGATAACTTGAAGAAAGAAATTTCTCCCTTGCTTGGATTATGCATCCAGGCACCCAGAACATCCAGAGCGAGCTTGGTGAAAGGATCATCACGTTCAGTTGCAAATACTGAAGCCCAGAAAGCTTTGATTGCTCACTGGCAGGGGATAGTTAAGAGCCTTGGGAAATTCTTGAGTACTTTGAAAGCAAATCATGTTCCCCCATATTTGGTTCGTAAGGTGTTCACTCAAATTTTTTCTTTCATCAACGTCCAACTTTTTAACAGTCTTCTTCTAAGACGGGAGTGCTGCTCATTTAGTAATGGAGAATATGTGAAATCTGGTTTGGGTGAATTGGAGGATTGGTGCTCTGACGCTACAGATGAGTACTGTGGTTCGGCATGGGATGAGCTCAGACATATAAGACAGGCTATTGGATTTTTGGTCATACATCAGAAACCAAGGAAAACGCTGCATGAAATAAGTCATGACCTCTGCCCAGTCCTCAGCATACAGCAGCTATATCGGATTAGCACCATGTACTGGGATGACAAATATGGCACACATAGCGTATCCCCTGATGTTATATCCAATATGAGAGAGTTGATGACTGAAGATTCTAATAACGCAGTCAGTAATTCTTTCCTGTTGGATGATGATTCAAGCATTCCGTTTTCTGTTGATGATTTGGCGAAGTCGAAGGAACTGATCGAGATGTCTGATTTAGAGCCCCCACAACTATTACGTGTAAACACTGGCTTTAGTTTTCTGTTGCCACGCCCAGACGGACAGATTTCGTAG 5007 0.4136 MMFSYLHLQGNPVNITVGSHVWVEDPDVSWIDGQVSNIKGKDAEIHTINGKKVCAYFAFLNKFHTVVTKLSKIYPKDMEAPAGGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDSHMMEQYKGAPLGELSPHVFAIADVAYRAMIHEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRAATEGRTVEQQVLECSQIQFWKHLAMLKLSGITIPGNRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQINDPERNYHCFYFLCAAPQEEIDKYKLGSPTTFHYLNQSKCYDLADISDSREYLATRRAMDIVGISQKEQEAIFRVVAAILHIGNIDFAKGMEVDSSVPKDDKAKFHLKTTAELLMCDAGSLEDALCKRVMITPEEVIKRSLDPESAAVSRDGLAKTIYSRLFDWLVNKINNSIGQDSSSKSLIGVLDIYGFESFKSNSFEQFCINFTNEKLQQHFNQATSQTMISTYHVFKMEQEEYTKERINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSNKLYQTFKNHKRFVKPKLSRTNFIISHYAGEVHYQSDHFLDKNKDYVVAEHQDLLSASNCPFVAGLFPPLPEETSKSSKFSSIGSRFKLQLQQLMETLSSTQPHYVRCVKPNNLLKPAIFENSNVMQQLRCGVSMGVLEAIRISCAGYPTRRAFFEFINRFSLLAPEITEIHHDEKTVCQKILEKAGLKGYQIGQTKVFLRAGQMAELDARRAQMLGNAAKTIQRRIRTHQARKHYLALRKNTTIMQALWRGRLAFKFYNKLRRDAAAVKIQKNIRRYESMKSYTKLKASVLIVQTALRAIASHKEFRFRKQAKASIIIQAQWRCHKAASYYKKLKKGSIVTQCRWRGIMARRELRKLKMAARETGALKEAKDKLEKRVEELTWRLQLEKSLRSNLEESKAQEIAKLQNLLQETQNKFDETNALLIKEREAAKKAIDEAPPVVKETQVIVEDTQKIESLTVEIEILKNILHTSDFSVLFRCCHHHHPKLTDLDLASRLDAITAHVSSLLFIPPSRAIVAGFRTVTSLDATAITSASPLSWMFLVLLSSAVSAAVVCSLCSQPLSVATSSLESEKQKADDFEMKYKESQAYCEEKSKLLEDTEKKVRQLQESMTRLEEKVANSESENQVLRQQAVSMAPNKFLSGRSRSVIQRPDGGHIGTEAKSTSDMHSTSMNHREHSEVDDKPQKSLNEKQQENQELLIRSIQQNLGFSGNRPVAACIIYKCLLHWRSFEVDRTSVFDRLIQTVGHAVETQDNNDVLAYWLSNASTLVLLLQRTLKASGAAGMAPQRRRSSSGSLFGRVTHSFRGTPAGVTLPLINGSMSGVDTLKVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVANTEAQKALIAHWQGIVKSLGKFLSTLKANHVPPYLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKSGLGELEDWCSDATDEYCGSAWDELRHIRQAIGFLVIHQKPRKTLHEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRELMTEDSNNAVSNSFLLDDDSSIPFSVDDLAKSKELIEMSDLEPPQLLRVNTGFSFLLPRPDGQIS 1668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01656 1668 ProSiteProfiles IQ motif profile. 774 800 IPR000048 GO:0005515
Vimu2g01656 1668 Gene3D - 463 657 - -
Vimu2g01656 1668 ProSiteProfiles IQ motif profile. 820 847 IPR000048 GO:0005515
Vimu2g01656 1668 ProSiteProfiles IQ motif profile. 795 824 IPR000048 GO:0005515
Vimu2g01656 1668 SMART iq_5 890 912 IPR000048 GO:0005515
Vimu2g01656 1668 SMART iq_5 771 793 IPR000048 GO:0005515
Vimu2g01656 1668 SMART iq_5 794 816 IPR000048 GO:0005515
Vimu2g01656 1668 SMART iq_5 867 889 IPR000048 GO:0005515
Vimu2g01656 1668 SMART iq_5 842 864 IPR000048 GO:0005515
Vimu2g01656 1668 SMART iq_5 819 841 IPR000048 GO:0005515
Vimu2g01656 1668 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 16 78 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vimu2g01656 1668 ProSiteProfiles Myosin motor domain profile. 83 769 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu2g01656 1668 Coils Coil 914 980 - -
Vimu2g01656 1668 Coils Coil 1147 1188 - -
Vimu2g01656 1668 ProSiteProfiles IQ motif profile. 868 895 IPR000048 GO:0005515
Vimu2g01656 1668 FunFam unconventional myosin-Va 870 918 - -
Vimu2g01656 1668 Pfam DIL domain 1483 1586 IPR002710 -
Vimu2g01656 1668 FunFam Myosin 2 336 453 - -
Vimu2g01656 1668 Pfam Myosin head (motor domain) 85 757 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu2g01656 1668 SMART MYSc_2a 78 770 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu2g01656 1668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 821 IPR027417 -
Vimu2g01656 1668 Gene3D - 704 770 - -
Vimu2g01656 1668 Gene3D Myosin VI head, motor domain, U50 subdomain 336 635 - -
Vimu2g01656 1668 Gene3D Kinesin motor domain 86 699 IPR036961 -
Vimu2g01656 1668 ProSiteProfiles IQ motif profile. 891 920 IPR000048 GO:0005515
Vimu2g01656 1668 Pfam IQ calmodulin-binding motif 870 889 IPR000048 GO:0005515
Vimu2g01656 1668 Pfam IQ calmodulin-binding motif 774 792 IPR000048 GO:0005515
Vimu2g01656 1668 Pfam IQ calmodulin-binding motif 895 912 IPR000048 GO:0005515
Vimu2g01656 1668 SMART DIL_2 1482 1589 IPR002710 -
Vimu2g01656 1668 CDD MyosinXI_CBD 1247 1630 IPR037975 GO:0007015
Vimu2g01656 1668 PANTHER MYOSIN 75 1595 - -
Vimu2g01656 1668 CDD MYSc_Myo11 97 757 IPR036018 -
Vimu2g01656 1668 ProSiteProfiles Dilute domain profile. 1296 1607 IPR002710 -
Vimu2g01656 1668 MobiDBLite consensus disorder prediction 1201 1249 - -
Vimu2g01656 1668 FunFam Myosin heavy chain 276 331 - -
Vimu2g01656 1668 MobiDBLite consensus disorder prediction 1226 1247 - -
Vimu2g01656 1668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 821 920 IPR027417 -
Vimu2g01656 1668 Gene3D - 276 334 - -
Vimu2g01656 1668 PRINTS Myosin heavy chain signature 170 195 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu2g01656 1668 PRINTS Myosin heavy chain signature 113 132 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu2g01656 1668 PRINTS Myosin heavy chain signature 453 481 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu2g01656 1668 PRINTS Myosin heavy chain signature 516 544 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu2g01656 1668 Gene3D - 823 869 - -
Vimu2g01656 1668 Gene3D - 771 822 - -
Vimu2g01656 1668 Gene3D - 870 919 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01656 Vimu-Chr2 11781889 11800450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01656 1124 1664 Myosins gene family AT1G54560 80.110 0.0 900
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01656 K10357 - ming:122091530 2239.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01656 2 11781889 11800450 Vimu2g01656 2 11781889 11800450 ECH
Vimu2g01656 2 11781889 11800450 Vimu3g02211 3 36813772 36829474 PCT