Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01650 ATGGCCCCTAACGCAGGAGCTGAGAAGGCCTTTAGCTTTATGATGGACTTGGGAATTTCTAAGGAGAAGGTGAAGCCAGTGTTGATAAAGCTGTTAAGAGTTTATGAAGGAAATTGGGAACTAATTGAAGACGACAGTTATCGGACACTTGTAGATGCGTACTTTGATTTTGAGAAAGAGCAGGTAGTTGAAGGTGAGAGAAAACCTAATGCCAGTGGTCATGGCCAAATATCAACAGGGGAACCGTTCTTGGTAGATGGTGATGACGGTGTTTCATCAGTCATGGACAGCTCGAGCAAAAAGTTAAGTGCAGAAGTCAAAAAATCATCCTCAAAGAAAAACATTAAGCCATCTCAAACATTCACGGAAGATGATAGGCCCCAAACCAGTTCACAAGCATCACATTCAACGATGAGTGAGGCCAAAAAGATCTTTAATTTACCTCGTGGATCAGCTAAGGACAGAGAATCGTACCCTGCGAAAGCATCATCTGCACGGCACCGTGGCCAGATCGAGATGAACCTTGTGAAGCCAAGGGCTAAAAAACCCAAATTAGTTACTTCGACGAATCATAATGGAGATCTTTGTGTTAAACCTCCGTCAAATCAGGCTCAGGATTTGCAAAGTAAAAATCTTGTACCAGCCTGCATCAATAATACCCGCGCTTATAATGGAAATATTACAATCGCTAGTTCTTCACGTCTTGAAGAAGTTAAATTATCTTTGAATTGTGAGTCAGCCTTGGCAGGACTAAACTTCCGTATTCCTGATTTGGATATTGCTATGAAGTTCATGGATAGGAAGTACCTTAGCTCAAGCAAGACTGCTGACCCTCAATTTTCTACGGCAAAGCTATTGAATGATCTTTGTAGCATTTTTCTTAAGCTGGGGCTTCGAAAGGGGTCAAATTCCAACCTAGCCAATACAAATACAGAATACGCTAGTCTAGAAGAAAGGAAACCCTTTAATTTTATCATTGACATGACAAAAGGTTGCGAAAAGGTGAAAATATCGTTAATAGATGAATTTGGCGGTGAAGCCTTGCCAAAGTTTAATTACATACCATGCAATATAATATATCAAAGTGCTACTGTAAATATTTCTTTGGCCCGGATTTCGGATGAGGGTTGCTGTTCTGATTGTTCAGGCGACTGTCTTTCTTCATCATTACCATGTGCGTGTGCTCGGGAAACTGGTGGAGAGTTTGCTTACACTCCTCAAGGTTTGTTGAAAGAAGAATTTCTAACTGCTTGCGCGACTATGAAGACTGATCCTAAAGATCATCATTTTGTGTACTGTCAAGAGTGCCCTTTGGAGAAGTCAAAGAATGAGTACAGGCCTGAACGATGCAAGGGACATATGGTAAGGAAATTTATAAAGGAATGTTGGAGGAAATGCGGATGTGACATGCTTTGTGGGAATCGGATAGTGCAACGAGGTATTGCATGCAAATTGCAGGTGTTCTTAACTCGAGAAGGTAAAGGATGGGGCCTTAGAACGTTAGAAGATTTGCCGAAAGGAACTTTTGTATGTGAATATAGTGGAGAGATATTAACCAATATGGAGTTATACGATAGGATAGTGCACGAGAGTGGGAATGACAGACATACATATCCTGTAACTCTTGATGCGGACTGGGGCTCAGAAAAGGGGTTAAAGGATGAGGAGGCACTATGTTTAGATGCAACATATAATGGAAATGTAGGAAGGTTCATCAATCATAGATGCTATGATGCAAATCTCATAGACATTCCCGTTGAAATAGAGAGTCCAGATCACCATTATTATCATCTTGCCTTCTTTACCAATAGAAATGTAAGTGCGTATGAGGAATTGACATGGGTAAGTTGGATTATGGTATTGATTTTGATGATAAAGATCATCCTATTAAAGCATTTCGGTGTTCTTGTGGAAGCGCCTTCTGCCATGATAAGAAACAAAAAGGTTAGTTCCATTAATCAACTGTTTTCCTTAGTTGCGGAATTCTTCACCCCTAGATGCAAGTGTTAA 2010 0.4055 MAPNAGAEKAFSFMMDLGISKEKVKPVLIKLLRVYEGNWELIEDDSYRTLVDAYFDFEKEQVVEGERKPNASGHGQISTGEPFLVDGDDGVSSVMDSSSKKLSAEVKKSSSKKNIKPSQTFTEDDRPQTSSQASHSTMSEAKKIFNLPRGSAKDRESYPAKASSARHRGQIEMNLVKPRAKKPKLVTSTNHNGDLCVKPPSNQAQDLQSKNLVPACINNTRAYNGNITIASSSRLEEVKLSLNCESALAGLNFRIPDLDIAMKFMDRKYLSSSKTADPQFSTAKLLNDLCSIFLKLGLRKGSNSNLANTNTEYASLEERKPFNFIIDMTKGCEKVKISLIDEFGGEALPKFNYIPCNIIYQSATVNISLARISDEGCCSDCSGDCLSSSLPCACARETGGEFAYTPQGLLKEEFLTACATMKTDPKDHHFVYCQECPLEKSKNEYRPERCKGHMVRKFIKECWRKCGCDMLCGNRIVQRGIACKLQVFLTREGKGWGLRTLEDLPKGTFVCEYSGEILTNMELYDRIVHESGNDRHTYPVTLDADWGSEKGLKDEEALCLDATYNGNVGRFINHRCYDANLIDIPVEIESPDHHYYHLAFFTNRNVSAYEELTWVSWIMVLILMIKIILLKHFGVLVEAPSAMIRNKKVSSINQLFSLVAEFFTPRCKC 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01650 669 MobiDBLite consensus disorder prediction 113 141 - -
Vimu2g01650 669 Pfam SET domain 495 614 IPR001214 GO:0005515
Vimu2g01650 669 ProSiteProfiles SET domain profile. 483 617 IPR001214 GO:0005515
Vimu2g01650 669 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 614 - -
Vimu2g01650 669 SMART set_7 483 624 IPR001214 GO:0005515
Vimu2g01650 669 Coils Coil 299 319 - -
Vimu2g01650 669 Gene3D - 1 60 IPR043017 -
Vimu2g01650 669 SUPERFAMILY SET domain 319 614 IPR046341 -
Vimu2g01650 669 MobiDBLite consensus disorder prediction 65 167 - -
Vimu2g01650 669 MobiDBLite consensus disorder prediction 147 162 - -
Vimu2g01650 669 CDD SET_SETDB-like 349 614 - -
Vimu2g01650 669 ProSiteProfiles Pre-SET domain profile. 377 480 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu2g01650 669 Gene3D SET domain 302 615 IPR046341 -
Vimu2g01650 669 Pfam Pre-SET motif 329 475 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu2g01650 669 Pfam Ubiquitin-binding WIYLD domain 8 58 IPR018848 -
Vimu2g01650 669 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 660 IPR025776 -
Vimu2g01650 669 SMART preset_2 325 467 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01650 Vimu-Chr2 11737470 11754309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01650 459 613 C2H2 Transcription Factor Family AT2G23740 41.667 1.47e-27 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu2g01650 Pre-SET 2.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01650 - - var:108346078 1124.77