Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01648 TTCACTTGGGACTCGAAAGCTATGTCTTCATCTTCTCGTGTTCTTCCCACTCCCCTAGAAAACAAGTATATGAAACCCCCAGATTCTTGTCATCTTTCACCTGCCAGTGATCTGGCTGCAAATTCTGTCTCATCAAATTCAATTACAAGTGCTGGGAAGATCATCTCATCACCCTCTGAATATCCTGATGCCACCCCTTTTTCCTATGCTTCACAGCATGATAGGCAAAATGAAGATCTCCCCTTTGTTTCTCAGACATTGGGTGACAATGTGTCTTCCGAAATACACTCAACAACATTCATTTCTCACCCTCATGAAAGCACAGATATTACCTGGGGACCAGATCCATTTCAGGATATTCTTGGCTTTCCCGAAAATATTTCTGCCCAGCATGATCAGGTGGTAGACAATGCCTGTTACATAAACGATGAGAATGTCAAAAGAACCGATTTTGGGGAGTGGGTTGATCAGTTAATGTCAATTGATGATTCTCTTCACCCAAACTGGAGTCAGCTTCTTGGTGATGACAATGCAACAGAACCAAAACCAAAGGTTCCTCAGTTGCTGGATATACCATCTGGAGAAGTTAATGGCAATTCAGCAGCAACCACACCACAGACTAAGACTAGAATGCGTTGGACTCCAGAACTTCACGAGGCCTTTGTGGAAGCAGTCAATCAGCTTGGTGGTAGTGAGAAGGCTACTCCAAAGGGTGTGTTGAATCTGATGAAAGTTGATGGCCTTACCATCTATCATGTAAAAAGCCACTTGCAGAAGTATAGAACTGCCAGATACAAACCAGAGCCATCAGAAGGTATGCTAAAGAGTAAAGGGATCACTGAAGCATTACGATTGCAGATGGATCTCCAGAAGCGACTTCACGAGCAACTTGAGATTCAGAGAAAGTTGCAAATTCAAATCGAAGATCAAGGGAAACGTCTTCAGATGATGTTTGAGAAACAACGAGAGATGGGTGACAAGAAGGTTAATGGCTCCTCCGGAGAGGTGGCAGCAGCTGCCGCCACTGCCACCACCACTACCACCATCGCCGCTGCCGCCGCCACCCCATCAGACACTGTGCTTCCTTCTTCTCCTCCAATAGAAACCTCAAATGAGGGACGTGAGAAAATGATGCATGGAGAGAAGAATGGAAGCACGAAGCAAAAAACAAGTGAAGGTGAAGATGAAGATGAAATTGCACCAGCTACAAAACGGGTGAAAAGTTCATAA 1230 0.4472 FTWDSKAMSSSSRVLPTPLENKYMKPPDSCHLSPASDLAANSVSSNSITSAGKIISSPSEYPDATPFSYASQHDRQNEDLPFVSQTLGDNVSSEIHSTTFISHPHESTDITWGPDPFQDILGFPENISAQHDQVVDNACYINDENVKRTDFGEWVDQLMSIDDSLHPNWSQLLGDDNATEPKPKVPQLLDIPSGEVNGNSAATTPQTKTRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVDGLTIYHVKSHLQKYRTARYKPEPSEGMLKSKGITEALRLQMDLQKRLHEQLEIQRKLQIQIEDQGKRLQMMFEKQREMGDKKVNGSSGEVAAAAATATTTTTIAAAAATPSDTVLPSSPPIETSNEGREKMMHGEKNGSTKQKTSEGEDEDEIAPATKRVKSS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01648 409 MobiDBLite consensus disorder prediction 1 37 - -
Vimu2g01648 409 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 199 384 IPR044848 GO:0003700
Vimu2g01648 409 MobiDBLite consensus disorder prediction 1 17 - -
Vimu2g01648 409 Pfam MYB-CC type transfactor, LHEQLE motif 279 323 IPR025756 -
Vimu2g01648 409 MobiDBLite consensus disorder prediction 353 370 - -
Vimu2g01648 409 FunFam Myb family transcription factor 207 265 - -
Vimu2g01648 409 MobiDBLite consensus disorder prediction 193 207 - -
Vimu2g01648 409 MobiDBLite consensus disorder prediction 353 409 - -
Vimu2g01648 409 MobiDBLite consensus disorder prediction 188 207 - -
Vimu2g01648 409 Pfam Myb-like DNA-binding domain 210 261 IPR001005 -
Vimu2g01648 409 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 265 IPR017930 -
Vimu2g01648 409 SUPERFAMILY Homeodomain-like 206 262 IPR009057 -
Vimu2g01648 409 Gene3D - 207 266 - -
Vimu2g01648 409 MobiDBLite consensus disorder prediction 372 409 - -
Vimu2g01648 409 NCBIfam myb-like DNA-binding domain, SHAQKYF class 208 262 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01648 Vimu-Chr2 11718276 11720966 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01648 49 333 G2-like Transcription Factor Family AT3G04450 43.030 1.42e-69 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu2g01648 Myb_DNA-binding 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01648 - - gmx:100803267 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01648 2 11718276 11720966 Vimu2g01648 2 11718276 11720966 ECH