Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01641 ATGCTGTTTATTTGGACCACATGTTCATTTTCTCTGGAAAAGGACACACATTATTGTGTTGTGCTGAAGCAAGCAGTGACTATGAAGACTCCTTGCTGTGAGAGAATGGGAATGAAGAAGGGGCCTTGGACTGCAGAGGAAGATCAGATATTGGTTTCTCATATTCAACGATATGGCCATGGTAACTGGCGTGCCCTTCCTAAACAAGCTGGATTGTTAAGGTGTGGCAAGAGTTGCAGGCTTCGTTGGATAAATTACCTAAGACCAGATATTAAACGAGGGAAATTCAGCAAGGAAGAAGAAGATACCATCCTAAAGCTGCATGAAATTCTTGGAAATAGGTGGTCTGCTATAGCGACAAGCTTACCCGGAAGAACAGACAACGAAATAAAGAATTTTTGGCATACCCATTTGAAGAAAAGGATCCAAAAAAGTGGAGTGCATATAAATGGCAATGCTTCATCGCATATTTTGCAAGAGGCACAAGCAAATAGTTCATCAAGTTCAAGTGCAGTTTCTAGTGCCTATGGAAATGTAATGATTGACAATTACGGTTTACCCTCAAGGAAGAATCCAATCAATCCACCTATTGTAGGTACTGGATTTTATGGTGCAGTCCCCTCAGATACTTTTGGAGAAACTGAGGACAATCACGATTCTTGTCAGATAAGTGAAGAAATGGAGTTTTGGTACAATATATTCATCAAATCAGGGCAAACATCACGAGACAATGAGAATCTAGGACATTAG 750 0.404 MLFIWTTCSFSLEKDTHYCVVLKQAVTMKTPCCERMGMKKGPWTAEEDQILVSHIQRYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEDTILKLHEILGNRWSAIATSLPGRTDNEIKNFWHTHLKKRIQKSGVHINGNASSHILQEAQANSSSSSSAVSSAYGNVMIDNYGLPSRKNPINPPIVGTGFYGAVPSDTFGETEDNHDSCQISEEMEFWYNIFIKSGQTSRDNENLGH 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01641 249 SUPERFAMILY Homeodomain-like 36 134 IPR009057 -
Vimu2g01641 249 ProSiteProfiles Myb-like domain profile. 35 87 IPR001005 -
Vimu2g01641 249 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 29 207 - -
Vimu2g01641 249 CDD SANT 95 138 IPR001005 -
Vimu2g01641 249 SMART sant 39 89 IPR001005 -
Vimu2g01641 249 SMART sant 92 140 IPR001005 -
Vimu2g01641 249 Pfam Myb-like DNA-binding domain 40 87 IPR001005 -
Vimu2g01641 249 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
Vimu2g01641 249 Gene3D - 95 169 - -
Vimu2g01641 249 CDD SANT 42 87 IPR001005 -
Vimu2g01641 249 FunFam MYB-related transcription factor 39 92 - -
Vimu2g01641 249 Gene3D - 39 92 - -
Vimu2g01641 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 87 IPR017930 -
Vimu2g01641 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 142 IPR017930 -
Vimu2g01641 249 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01641 Vimu-Chr2 11672472 11673596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01641 29 234 MYB Transcription Factor Family AT2G31180 45.455 3.86e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu2g01641 Myb_DNA-binding 3.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01641 K09422 - gmx:102663040 368.622