Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01628 ATGACTTCCTCCTTCTCTTCTCTTCCTTTCAACGAAAACGACTCTCAAGAAATGCCCCTTTACGAACTTCTCGCTCACCCTGCTGCAGCTTCTTCCCACACAGTAACATCATCGTTATCTTCGCTGTCTCATGCTTCAAGTGTCGCCGAAGCAGAGGTTTCGGTTTCGTACAGAGGGGTTCGGAGGAGGCCGTGGGGGAAGTACGCGGCGGAGATAAGGGATTCCACCAGGAACGGAGTGAGGGTTTGGTTGGGAACGTTCGACACTGCCGAGGCTGCTGCTCTGGCTTACGACCAGGCTGCGCTGGCCATGCGAGGCTCCATGGCGGTGCTCAACTTCCCGGCTGAGATTGTTTGGCAATCGCTTCGGAAAATGGAGTACGGTTTTGACCAAGGGTGTTCCCCTGTTCTGGAGTTGAAAAAGAGACACTCCATTAATAGAAAATGGGAGAGGAACAAGCTCAAGAACAAGGTGCAGGAAGAAGAAGAAGAAGGGGTTTCAGAAAATGTGATGGTGTTGGAGGACTTAGGTGCAGAGTATTTGGAACATCTTCTTACTGTCTCTCAGGATATCATATGA 579 0.506 MTSSFSSLPFNENDSQEMPLYELLAHPAAASSHTVTSSLSSLSHASSVAEAEVSVSYRGVRRRPWGKYAAEIRDSTRNGVRVWLGTFDTAEAAALAYDQAALAMRGSMAVLNFPAEIVWQSLRKMEYGFDQGCSPVLELKKRHSINRKWERNKLKNKVQEEEEEGVSENVMVLEDLGAEYLEHLLTVSQDII 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01628 192 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Vimu2g01628 192 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Vimu2g01628 192 PANTHER DNA-BINDING DOMAIN 41 185 IPR044808 GO:0003700|GO:0009873
Vimu2g01628 192 FunFam Ethylene-responsive transcription factor 2 55 116 - -
Vimu2g01628 192 Pfam AP2 domain 57 106 IPR001471 GO:0003700|GO:0006355
Vimu2g01628 192 Gene3D AP2/ERF domain 56 116 IPR036955 GO:0003700|GO:0006355
Vimu2g01628 192 CDD AP2 57 115 IPR001471 GO:0003700|GO:0006355
Vimu2g01628 192 ProSiteProfiles AP2/ERF domain profile. 56 114 IPR001471 GO:0003700|GO:0006355
Vimu2g01628 192 SMART rav1_2 56 120 IPR001471 GO:0003700|GO:0006355
Vimu2g01628 192 SUPERFAMILY DNA-binding domain 57 116 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01628 Vimu-Chr2 11555123 11555874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01628 8 190 AP2-EREBP Transcription Factor Family AT3G23240 53.552 8.30e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu2g01628 AP2 1.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01628 K14516 - gmx:100787732 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01628 2 11555123 11555874 Vimu3g02466 3 39142721 39143350 ECH
Vimu6g02728 6 23831912 23832430 Vimu2g01628 2 11555123 11555874 ECH
Vimu3g01304 3 23123344 23123856 Vimu2g01628 2 11555123 11555874 ECH
Vimu2g01628 2 11555123 11555874 Vimu2g01628 2 11555123 11555874 ECH
Vimu2g01628 2 11555123 11555874 Vimu3g01301 3 23100452 23101057 PCT