Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01627 ATGTCCACCATGAGTAAGCCCAGGGGTCGCCCTCTAGGCTCCAAGAACAAGCCCAAACCAGCATCGGTCAGGAGCCCAGACACCCATAATCTTATCGAAAGTCACATGATCGAGATAACCAGTGGAACAGACATCATCGATAACTTGGTCCAGTTTGCTCGAAGGAAAAAACGAGGTTTTTGTGTTCTGAGCGCTATTGGGAGCATTAGGAATGTGACTCTCCAGCAGTCGTTGATCCCTGACACCATCATGACATTGGAAGGTCAGTTGCAGATACTATCGTTGAAAGGTTCGTTTTTGCCCGGAGCAACACCGCCTACGTTGTCGGTGTATCTGGCCGGTGCTAAGGGACAAGTTGTCGGAGGCAAAGCGGTAGGTCCGTTGGTGGCATCGGGAAGAGTTTTCATTGTTTTGGCTGCGTTTTCTAATGCTGCATTTGACAGATTACCCTCTGTGCTTGAGGGTAACGAAGAGGCTTCATCCTCTGATGATCATCAACATCATAACAATTTTTGTCCTTCAAATCTGCCATAG 534 0.4813 MSTMSKPRGRPLGSKNKPKPASVRSPDTHNLIESHMIEITSGTDIIDNLVQFARRKKRGFCVLSAIGSIRNVTLQQSLIPDTIMTLEGQLQILSLKGSFLPGATPPTLSVYLAGAKGQVVGGKAVGPLVASGRVFIVLAAFSNAAFDRLPSVLEGNEEASSSDDHQHHNNFCPSNLP 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01627 177 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 4 167 IPR014476 GO:0003680
Vimu2g01627 177 Pfam Plants and Prokaryotes Conserved (PCC) domain 34 143 IPR005175 -
Vimu2g01627 177 Gene3D - 33 167 - -
Vimu2g01627 177 ProSiteProfiles PPC domain profile profile. 29 162 IPR005175 -
Vimu2g01627 177 MobiDBLite consensus disorder prediction 1 27 - -
Vimu2g01627 177 MobiDBLite consensus disorder prediction 156 177 - -
Vimu2g01627 177 SUPERFAMILY AF0104/ALDC/Ptd012-like 30 150 - -
Vimu2g01627 177 CDD DUF296 35 141 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01627 Vimu-Chr2 11543574 11544107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01627 6 162 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 50.625 1.07e-43 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01627 - - var:108344319 323.553