Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01626 ATGGAAAAAGGGCTGCTTCTTTTGTTGTTGCTGCTGTTGGTCATGGTGCTTTCTGCCTTTTCCATGGATGTGGAATATTCACTGTGCAATTGTGATGAGGAAGGGTTTTGGAGCATCCACAACGTCCTGGTTTGCCAGAAAGTGAGCGACTTTTTCATCGCCATTGCGTATTTTTCCATTCCCCTTGAGCTCCTTTACTTTGTCAGTCGCTCCAATGTACCCTTTAAATTGGTCTTCCTTCAATTCATTGCGTTCATAGTTCTCTGTGGATCAACCCATTTACTCAATGCCTATACTTACTACGGCCCCCACTCGTTCCGGTTGTTTCTTTCCCTCACTGTTGCTAAGTTTCTCACTGCTCTTGTCTCCTGTGCCACTGCCATTTCCTTTCCCACCCTCATACCTCTTCTGCTGAAAATCAAAGTGAGGGAGCTCTTCTTGAGGCAGAATGTGTTGGAATTGGGCCAGGAGGTTGGGATTATGAAGAAACAGGAGGAAGCTAGTTGGCATGTTAGGATGCTCACCTGTGAGATTAGGAAATCTCTGGATAAGCATACTATCTTGTATACCACACTTGTTGAGCTTTCCAAGGCCTTGGATTTGCACAATTGTGCAGTTTGGATGCCTGATGATGATAGGAGGGAAATGCTTCTGACACATGAGTTGAAACCAAACTCAGCAAGTAGTTTTCACAATTCTATTCCTATTAGTGATCCGGATGTGTTGGACATAAAGAAGAGCAATGGGGTTTGGATTTTGAGGCCTGGTTCGAAACTGGGAGCTGCAAGTAGTGGTGGTGGGTCTGGGGATTCAGGTGCCGTGGCAGCCATTCGCATGCCCATACTTCATGTTTCCAATTTCAAAGGAGGAACACCAGTGTTAGTTGAAACGGCTTATGCCATACTGGTTTTGGTTCTTCCAAATTCAAACTCCAGGGCTTGGACCTCCCATGAAATGGAGATAGTGGAAGTGGTTGCTGATCAGGTTGCTGTGGCCTTGTCTCACGCGTCTGTTCTTGAAGAGTCTCAGCTTATGAGCCAGAAACTTGCAGAGCAAAACCGGGCATTACAACAGGCTCAGAAGAATGCAATGATGGCCAGGAAAGCAAGGAGTTCGTTTGAGAAAGTTATGAGTCATGCAATGCGGAGGCCAATGCATTCAATCCTGGGCTTGCTTTCAATGTTTCAAGAGGATAATATAAGGCCAGAACAGAAGATTGTTATTGACTCAATTTTAAAAGTTAGCAATGCCCTATCACGATTGATTAATGATGTGATGGAGATTTCTGCAAATGACAATGGGACCTTCCGGTTGGAGATGAAACCTTTCAATCTGCATTCAATGATGAGGGAAGTTTCTTGCACTACTAAGTGTTTGTGTATATATAAAGGCTTTGGTCTTGAAGTTGATGTGGACAAGTCTTTGCCTGATCTGGTCATTGGTGATGAGGCAAGGTCTTTCCAAGTAATTTTACATATGATTGGCTATTTATTGAACATATATGACAGAGGGACTCTCTTATTTCAAGTTTATCTTGAAAGTGATAGTCGAGATAAAGATGATAAAAATATTGGAAAATGGAGCATGCAAAATGCTTATGTACATATAAGATTTAGTTTTCATATAAATGGTATGAGTTCCCAGGCAGATGAATCATTTTCAACAACAAATTGTAATGTTAAAGAGCATTTCAACAATGAATCTAAGGAAGTCCTCAGCTTCAGCATGTGCAAAACGCTGGTGCAGATGATGCAAGGTAATATTTGGATATCAACTAACACTATGGGTTTGACACAAGGAATGACGCTTCTGCTCAAGTTTCAGTCAGGATCATCACATGGAAGATTCATTCTTGCTCCTAAAGATTTCTCAAACTCCCAGTTTAAAGGGCTTAAGGTTGTGTTAGCTGATGATGATGATGTAAACAGGACCGTGACCAAGAAGCTGCTTGAGAAACTGGGGTGTCAAGTAACTGCTGTTTCATCAGGATTTGAATGTCTTGGTGCTATCAGTGCCTCTGGTAGCTTGTTCAAAATTATTCTGTTAGATCTTCACATGCCTGAAATGGATGGTTTTGAAGTTGCAAAAAGGATTAGGAAATTACAAAGCCATAATTGGCCCTTGATCATAGCTTTTACTGCCAGTGCAGAAGAGCACATCAAGGAGAGATGCCTACAGGTGGGAATGAATGGATTCATTCGAAAACCTATCCTCCTTCATGAGATTGCAGATGAACTTAGAGCTGTCCTACAACGTACAGGTGAAAAATTGTGA 2274 0.4208 MEKGLLLLLLLLLVMVLSAFSMDVEYSLCNCDEEGFWSIHNVLVCQKVSDFFIAIAYFSIPLELLYFVSRSNVPFKLVFLQFIAFIVLCGSTHLLNAYTYYGPHSFRLFLSLTVAKFLTALVSCATAISFPTLIPLLLKIKVRELFLRQNVLELGQEVGIMKKQEEASWHVRMLTCEIRKSLDKHTILYTTLVELSKALDLHNCAVWMPDDDRREMLLTHELKPNSASSFHNSIPISDPDVLDIKKSNGVWILRPGSKLGAASSGGGSGDSGAVAAIRMPILHVSNFKGGTPVLVETAYAILVLVLPNSNSRAWTSHEMEIVEVVADQVAVALSHASVLEESQLMSQKLAEQNRALQQAQKNAMMARKARSSFEKVMSHAMRRPMHSILGLLSMFQEDNIRPEQKIVIDSILKVSNALSRLINDVMEISANDNGTFRLEMKPFNLHSMMREVSCTTKCLCIYKGFGLEVDVDKSLPDLVIGDEARSFQVILHMIGYLLNIYDRGTLLFQVYLESDSRDKDDKNIGKWSMQNAYVHIRFSFHINGMSSQADESFSTTNCNVKEHFNNESKEVLSFSMCKTLVQMMQGNIWISTNTMGLTQGMTLLLKFQSGSSHGRFILAPKDFSNSQFKGLKVVLADDDDVNRTVTKKLLEKLGCQVTAVSSGFECLGAISASGSLFKIILLDLHMPEMDGFEVAKRIRKLQSHNWPLIIAFTASAEEHIKERCLQVGMNGFIRKPILLHEIADELRAVLQRTGEKL 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01626 757 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 25 754 - -
Vimu2g01626 757 CDD HATPase_ETR2_ERS2-EIN4-like 475 605 - -
Vimu2g01626 757 Gene3D - 631 756 - -
Vimu2g01626 757 FunFam Ethylene receptor 629 753 - -
Vimu2g01626 757 Pfam GAF domain 185 333 IPR003018 GO:0005515
Vimu2g01626 757 Gene3D - 360 435 - -
Vimu2g01626 757 Gene3D - 171 344 IPR029016 -
Vimu2g01626 757 SMART HisKA_10 369 434 IPR003661 GO:0000155|GO:0007165
Vimu2g01626 757 ProSiteProfiles Response regulatory domain profile. 632 750 IPR001789 GO:0000160
Vimu2g01626 757 SUPERFAMILY GAF domain-like 186 336 - -
Vimu2g01626 757 CDD REC_ETR-like 631 746 - -
Vimu2g01626 757 PIRSF Ethylen_sen_hybr_HK 1 757 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Vimu2g01626 757 SMART REC_2 631 746 IPR001789 GO:0000160
Vimu2g01626 757 SUPERFAMILY CheY-like 627 752 IPR011006 -
Vimu2g01626 757 Pfam His Kinase A (phospho-acceptor) domain 370 434 IPR003661 GO:0000155|GO:0007165
Vimu2g01626 757 Coils Coil 339 369 - -
Vimu2g01626 757 CDD HisKA 368 429 IPR003661 GO:0000155|GO:0007165
Vimu2g01626 757 SMART gaf_1 183 343 IPR003018 GO:0005515
Vimu2g01626 757 Pfam Response regulator receiver domain 633 745 IPR001789 GO:0000160
Vimu2g01626 757 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 438 593 IPR036890 -
Vimu2g01626 757 ProSiteProfiles Histidine kinase domain profile. 376 611 IPR005467 -
Vimu2g01626 757 FunFam Ethylene receptor 4 336 430 - -
Vimu2g01626 757 Gene3D - 436 610 IPR036890 -
Vimu2g01626 757 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 354 434 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01626 Vimu-Chr2 11533583 11536534 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01626 21 755 Miscellaneous Gene Families AT3G04580 60.347 0.0 882
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu2g01626 GAF 5.3e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01626 K14509 - gmx:100805023 1298.88