Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01624 ATGGAACCTAATGACAACCAACTCACCTCCTTCTTCCACCACCACCACCCCCACCACCACCATCACCACCAGCCCCAACCACCGCCGCAGACCGCTCCACCCACCACCGCCTCTCCCACCAACGGCCTCTTGCCCAACGCCGACGCCTCACACATACTCTACCCTCACTCCGTCGCCTCGGCTGTCTCATCCCAGCTCGAACCGGCCAAGAGGAAGCGGGGCCGCCCGAGGAAGTACGGCACGCCCGAGCAGGCTCTTGCTGCCAAGAAAGCCGCTACTGCTTCGTCTCAGTCGTTCTCTGGGGACAAGAAGCCCCACTCACCAACGTTCCCTTCTTCCTCATCTTTCACTTCTAAGAAATCTCATTCCTTCGCTCTAGGCAATGCAGGGCAAGGGTTCACTCCGCATGTCATTGCTGTTGCTGCTGGTGAGGACAATTCAGGAATAATGCCTTTTAGGGGTCAGCTTAGTCATCCTGTGTCTCTTGCTGAAGTTCACAAGTTGCACCTGCTTACAATGGATCTAGGTGCGGATGTTGGCCAGAAAATTATGTTATTCATGCAACAAAGTAGGCGTGAAATGTGTATTCTCTCTGCATCTGGTTCCATCTCTAATGCCTCTCTTCGCCAGCCAGCAACCTCAGGAGGCAACATTACATATGAGGGTCGATTTGAGATTATTTCACTTACTGGATCTTACGTCCGTAATGAGATTGGAACTCGAACTGGTGGTCTAAGTGTATGTTTATCTAACACTGATGGACAAATCATAGGTGGTGGAGTTGGTGGGCCGCTTAAAGCAGCTGGTCCAGTTCAGGTCATCGTTGGAACATTTTTTATTGATAACAAGAAGGAATCTAGCCCAAAAGTTGATACCTCTGCAAGTAAGTTGCCACCACCACCTGTTAGTGAACCAGTATCAAGTTTAGGTTTCCGCCAATCCGTTGACTCTCCCAGTGGAAATCCAATCCGCGGAAATGATGAGCATCAAGCCATGGGGGGAAGTCATTTCATGATTCAACAGCTTGGTTTGCAGGGGACGCCTCCCCGGTCCACAGACTGGGCTCGACCGGATTCAAGAAATTCCAGTTTTGAGCTGACAGGAAGGACAGGTCATGGGTCGCACCAGTCTCCTGAGAATGGGGGCTATGAGCAAATTCCCGATTGA 1167 0.5141 MEPNDNQLTSFFHHHHPHHHHHHQPQPPPQTAPPTTASPTNGLLPNADASHILYPHSVASAVSSQLEPAKRKRGRPRKYGTPEQALAAKKAATASSQSFSGDKKPHSPTFPSSSSFTSKKSHSFALGNAGQGFTPHVIAVAAGEDNSGIMPFRGQLSHPVSLAEVHKLHLLTMDLGADVGQKIMLFMQQSRREMCILSASGSISNASLRQPATSGGNITYEGRFEIISLTGSYVRNEIGTRTGGLSVCLSNTDGQIIGGGVGGPLKAAGPVQVIVGTFFIDNKKESSPKVDTSASKLPPPPVSEPVSSLGFRQSVDSPSGNPIRGNDEHQAMGGSHFMIQQLGLQGTPPRSTDWARPDSRNSSFELTGRTGHGSHQSPENGGYEQIPD 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01624 388 Gene3D - 167 296 - -
Vimu2g01624 388 ProSiteProfiles PPC domain profile profile. 163 300 IPR005175 -
Vimu2g01624 388 MobiDBLite consensus disorder prediction 285 388 - -
Vimu2g01624 388 Pfam Plants and Prokaryotes Conserved (PCC) domain 168 278 IPR005175 -
Vimu2g01624 388 CDD DUF296 169 278 IPR005175 -
Vimu2g01624 388 MobiDBLite consensus disorder prediction 1 48 - -
Vimu2g01624 388 SUPERFAMILY AF0104/ALDC/Ptd012-like 166 279 - -
Vimu2g01624 388 MobiDBLite consensus disorder prediction 307 324 - -
Vimu2g01624 388 MobiDBLite consensus disorder prediction 340 381 - -
Vimu2g01624 388 MobiDBLite consensus disorder prediction 90 121 - -
Vimu2g01624 388 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 18 328 IPR039605 GO:0003680
Vimu2g01624 388 MobiDBLite consensus disorder prediction 61 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01624 Vimu-Chr2 11512800 11518375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01624 46 388 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 44.293 7.86e-77 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01624 - - gmx:100816781 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01624 2 11512800 11518375 Vimu2g01624 2 11512800 11518375 ECH