Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01621 ATGTTCAAGCTATCGCGCGTGCTTCATCTCACCTCCACTTCTAGGCATAGGTTGTTGGAAGTGTTGTGGTCTAGGAATGTTGAAGTTGGAGACTCTCTGTGGGATCGGCGTGATTTTACCCATTCAGCCGGCATTTCTACTGCTACAAATAATTATTCTGCTAAAGGCATTGCTTATACCAGGTATGCCACGGATCGTATATTTGCTCCGTATACTGTTTACAAGGGCAAAGCGGCGTTCTCGTTGAGTCCTTGTCTTCCAACTTTTACTAAGTTGGATTCCGGGACTGTTGTAGTTGATCGACGTGGTTCAATGATGATGACTTTCATGCATTCTATTGGAGAACGTAAATATGACTGGGATAAGAGACAGAGATTTGCTCTCTCAGCCACTGAAGTTGGTTCTTTGATAACTATGGGCTCTCATGATTCCTCTGAATTCTTTCATGACCCTTCAATGTTATCAAGTAATGCTGGTCAAGTAAGGAAGAGCTTATCTATTAAGCCTAATGCAAACAGCAATGGGTACTTTGTGTCATTGAATGTTGTCAACAACCTGTTAAACACCAAAGACTACTTCAGTGTTCCTGTCACAACTGCTGAGTTCGCTGTAATGAAGACAGCTTGCAGTTTTGCATTGCCACACATTATGGGTTGGGACCAGATAACTAATCAGCAATCCAGAGGCACAGTGGGCCTTCAACGGAAGGGTGGTTCTCAAGTTTTAGATTTGGAATGGGAAAAATGA 747 0.4284 MFKLSRVLHLTSTSRHRLLEVLWSRNVEVGDSLWDRRDFTHSAGISTATNNYSAKGIAYTRYATDRIFAPYTVYKGKAAFSLSPCLPTFTKLDSGTVVVDRRGSMMMTFMHSIGERKYDWDKRQRFALSATEVGSLITMGSHDSSEFFHDPSMLSSNAGQVRKSLSIKPNANSNGYFVSLNVVNNLLNTKDYFSVPVTTAEFAVMKTACSFALPHIMGWDQITNQQSRGTVGLQRKGGSQVLDLEWEK 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01621 248 Gene3D Transcriptional Coactivator Pc4; Chain A 59 230 IPR009044 GO:0003677|GO:0006355
Vimu2g01621 248 Pfam Whirly transcription factor 73 207 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vimu2g01621 248 SUPERFAMILY ssDNA-binding transcriptional regulator domain 65 226 IPR009044 GO:0003677|GO:0006355
Vimu2g01621 248 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 44 248 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01621 Vimu-Chr2 11487009 11491343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01621 37 248 Whirly Transcription Factor Family AT1G71260 59.070 2.22e-89 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Vimu2g01621 Whirly 3.9e-53 CL0609