Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01614 ATGGAATCGATGAAGCAGAGGAATCAAGGAGGAAGTACAAGGTCGAGAATTTCAGCACTGATTGTGGATGACGATGCTGTCATTCGGAAAATCCACATGATGATGTTGGCGCGGTTGTTTAACATGGACGCAAAAACGGTTAGTGACGGAAAGGAAGCAGTGGATCTGCATCGATGTGGGGCAAATTTTGACATAATTTTCATGGACAAAGAAATGCCCGTCATGGATGGTCATGAGGCCACAAAAGAGCTACGTGGTATGGGTGTGAAGTGCTTGATTGTGGGAATTACTACGCGTGCTAATGGGAAAGATGGTGAAGAATTTTTTGCTGCAGGATCTAACTATTGCTTTGAAAAGCCTCTTGATCCAACAAAGATTGAACGAGTCTTGCAAGACCATCCCAATTTTACAACTTGA 417 0.4341 MESMKQRNQGGSTRSRISALIVDDDAVIRKIHMMMLARLFNMDAKTVSDGKEAVDLHRCGANFDIIFMDKEMPVMDGHEATKELRGMGVKCLIVGITTRANGKDGEEFFAAGSNYCFEKPLDPTKIERVLQDHPNFTT 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01614 138 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 132 - -
Vimu2g01614 138 SMART REC_2 17 130 IPR001789 GO:0000160
Vimu2g01614 138 ProSiteProfiles Response regulatory domain profile. 18 134 IPR001789 GO:0000160
Vimu2g01614 138 Pfam Response regulator receiver domain 20 129 IPR001789 GO:0000160
Vimu2g01614 138 Gene3D - 1 135 - -
Vimu2g01614 138 CDD REC_hyHK_CKI1_RcsC-like 20 130 - -
Vimu2g01614 138 SUPERFAMILY CheY-like 16 133 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01614 Vimu-Chr2 11390978 11391516 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01614 4 126 Response Regulator Gene Family AT3G04280 42.105 1.40e-27 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu2g01614 Response_reg 5.9e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01614 - - pvu:PHAVU_006G107500g 225.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01614 2 11390978 11391516 Vimu2g01614 2 11390978 11391516 ECH