Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01611 ATGGCGAAGAGGGAGCGAGTGAGAGGAGTGTCGGCGTCGGAATTGAAGGAGAGGTTGAAGGAATTGGTGAAGGCTATAGTCGACTCCGACGACTACGTGGTGGAAGCCGCCGACGAAGCCATCGCCACCCTTTCGGCTCTCAAACATTTAAAGTCTCCAGACTCTTTGGACGACTTTCCCCTTCCTCCCGAATTTCGATGCCCCATTTCAACCCAATTGATGACGGATCCCGTTATCTTATCCACCGGCCAGACTTATGATAGGCCATTCATTCAAAGGTGGTTGGATGAAGGCCACAGAACCTGTCCGCAGACCCAGCAGGTCCTGTCTCACTCCATTTTAACACCTAATTACTTGGTCCGGGACATGATTGTGCAGTGGTGTAGGGAGCGTGGAATTGAGCTTCCTAAGCCTGTTAAGGACATTGATGGCGTGGTCACTAATGCGGATAGGAACCATTTGAATTCGTTGCTTCGGAAGTTGTCATTGTCTGTTTCTGATCAGAAACAAGCTGCCAAGGAGCTTCGCCTTTTGACAAAGCGGATGCCTTCGATTCGAATCCTTGTTGGGGAGTCCAGTGATGTGATTCCCCAATTGCTGAATCCATTATCATCGCCTGACACGGCTTCTACTGACCCTGATCTCCACGAGGATTTGATCACCACGGTTCTCAATCTCTCTATCCATGATGATAACAAAAAGGCCTTTGCAGAGGATCCTGCAGTGATTTCTCTGCTTATTGATGCCTTGAAACGTGGAACAATTCAAACGAGAAGCAATGCTGCTGCTGCTATTTTCACATTGTCCGCGCTTGATTCCAACAAACACATCATTGGAAAATCCGGGGCTATCAAGCATTTGCTTGCGCTTTTGGATGAGGGACAGCCATTGGCCATGAAAGATGCTGCTTCGGCAATATTTAACCTTTGTCTTGTGCACGAGAATAAAGGAAGGACAGTGCGAGATGGGGCAGTTCGGGTTATTCTGAACAAGATGATGGACCACATCCTAGTTGATGAGTTGTTGGCCATACTGGCACTCCTATCCAGTCATCCCAGGGCTGTTGAAGAAATGGGTGATCTAGGTGCTGTTCCTTTGTTACTGGGGATTATTAGGGAGAGTGCATCAGAGAGGAGCAAGGAAAATTGTGTTGCAATTCTGTATACAATCTGTTTTAGTGATAGAACTAAGTTGAAGGAAATTAGAGAAGAAGAAAGAGCAAATGGTACACTGTCAAAACTTGCACAATGTGGAACTTCAAGGGCCAAAAGGAAAGCTAACGGTATTCTTGAAAGGTTTAATAGATCCCCCTCCTTAACACACACTGCTTAG 1332 0.4677 MAKRERVRGVSASELKERLKELVKAIVDSDDYVVEAADEAIATLSALKHLKSPDSLDDFPLPPEFRCPISTQLMTDPVILSTGQTYDRPFIQRWLDEGHRTCPQTQQVLSHSILTPNYLVRDMIVQWCRERGIELPKPVKDIDGVVTNADRNHLNSLLRKLSLSVSDQKQAAKELRLLTKRMPSIRILVGESSDVIPQLLNPLSSPDTASTDPDLHEDLITTVLNLSIHDDNKKAFAEDPAVISLLIDALKRGTIQTRSNAAAAIFTLSALDSNKHIIGKSGAIKHLLALLDEGQPLAMKDAASAIFNLCLVHENKGRTVRDGAVRVILNKMMDHILVDELLAILALLSSHPRAVEEMGDLGAVPLLLGIIRESASERSKENCVAILYTICFSDRTKLKEIREEERANGTLSKLAQCGTSRAKRKANGILERFNRSPSLTHTA 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01611 443 CDD RING-Ubox_PUB 62 114 IPR045210 -
Vimu2g01611 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 134 IPR013083 -
Vimu2g01611 443 PANTHER U BOX DOMAIN-CONTAINING 28 433 - -
Vimu2g01611 443 SUPERFAMILY RING/U-box 50 138 - -
Vimu2g01611 443 Gene3D - 337 437 IPR011989 -
Vimu2g01611 443 Pfam U-box domain 62 131 IPR003613 GO:0004842|GO:0016567
Vimu2g01611 443 FunFam RING-type E3 ubiquitin transferase 338 439 - -
Vimu2g01611 443 SMART arm_5 181 228 IPR000225 GO:0005515
Vimu2g01611 443 SMART arm_5 351 392 IPR000225 GO:0005515
Vimu2g01611 443 SMART arm_5 271 311 IPR000225 GO:0005515
Vimu2g01611 443 SMART arm_5 229 270 IPR000225 GO:0005515
Vimu2g01611 443 ProSiteProfiles U-box domain profile. 60 134 IPR003613 GO:0004842|GO:0016567
Vimu2g01611 443 SUPERFAMILY ARM repeat 19 433 IPR016024 -
Vimu2g01611 443 FunFam RING-type E3 ubiquitin transferase 60 134 - -
Vimu2g01611 443 SMART Ubox_2 64 127 IPR003613 GO:0004842|GO:0016567
Vimu2g01611 443 FunFam RING-type E3 ubiquitin transferase 191 335 - -
Vimu2g01611 443 Gene3D - 192 336 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01611 Vimu-Chr2 11338416 11339923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01611 123 443 U-box Gene Family AT3G07360 59.517 7.27e-125 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01611 - - gmx:100806619 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01611 2 11338416 11339923 Vimu2g01611 2 11338416 11339923 ECH