Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01604 ATGCCTTGCGGTGTATATGAGGCGAAGTGCAGGTACAGTGAAAGAAACAATAGAATAAGAGGATTTAGAAGAGAAAAATGGCGGCGTAGCATAAGAGTTCCGGGGATGAATGGGATTAGACGGGATGAGATAGATAAGAACACGATGGTGTTCGTGTGGACTGCAAACATACCCGTCACTGCACTCTGCAACCACAGCGCACCCATTGAATGCTGTTTTGGTACAGGGTCATGTGTGCTGAAGTTCAACACAAGCCAATATATGGCAATGGATGAGTGCGTCGAAGTGAAAGAGTATATTTACTCGTGGGGTGAAGACGGGTTCCCGACCACATTGTGCTGTCGAAATGCTCTCACGGTTGTGTCCAATGCGTTGGCCACACAAGCACTGAGCTCGGGAGGACAAGTTTTCCTTTCCCAAGATCAATGGCAGCCTTGTTTGCAGTCATTTCACCCGCAACCAGGGATGTCACTTGATTCATGTGGCTTTGACAATTTGTACCGAGGAAGTTCCATATGCTCCAACTTCATTTTGCAGGATGTTAGGACCCTGCAACAGTACCAAGACGCATTGAGCCGGTGCTCCCACTTCAACCAACCTTTTGGTCAATCTTGTGCAGATTGTACCGGTGGAATATCGAACGTGAGAGATACTTTGTATTCTCAAGTTGAAAAACACAACAACGAGATTGACAGAGCCATATGTGGGGTAGCAGCTATTGTTGCTCTTGCAGCTGGCAGACCAAATGATCCTCTCGTTGACAAATTTTTACTATGCTTGCCATCTTCAGCTTCAGGATCAGACAAGAGTAGAGGATCTCTGTGGAAAGCCTTGCTGAGTGTGCCAGTAGTTGTGATTGTAATATTGATTGTGGTTATTATGGTGAAATGTTTGTCCAAGAAGAAGGGTGGTAAACCGGTTGACTTGCAAGACATCACTGCATGGTCTGGATTGTACTGGTTCTGCAAAGCGGAAATTGAGAATGCCATGAACTACGGTGGTCGAAAGATAAGCCTTGGACGTGGAAGTGCAGGGCATGTATATAGAGGCGTTCTACCCAGTGGTCAAATCGTGGCCATCAAGCATTTAACAAGGAGTAATACCTCCGAGTCTTTCACACGAGAAGTTGAAGGCCTTTCAAGGCTTCGCCATCCAAACTTGGTTTGCCTCTTCGGCTGCTGCATTGAAGGGGATGAGAGATATTTAGTCTATGAATTTTGTGCAAACGGGAATCTTGCTCAACATCTCTTACGAAGAGATAGTCACTTGACCTGGGAAACAAGAGTTAGAATTTTGAGAGATTGTTCGTTTGCACTCAAGTACCTCCACCATCATATGGAAGGCTGTGTTGTCCATAGAGATATAAAGGCAAGTAACATGCAATGTAAATTTGAATATGTTCTTACGAACATTCTTTTGACTGAGAAATACCAAGCGAAACTGTCAGATTTTGGACTGTCAAAGGTGATGGGAATCAAAGAGAGCAAGGTTTTTACCGATGTAAGAGGAACCATAGGCTACATGGATCCAGAATACATGAGTAATGCCAAGCTAACGTGTGCCAGTGATGTATACAGTTTTGGTATTGTTGCTTTGCAAATATTGTCTGGACAGAAAGTCATAGAGTTGGATCTTGATGCCAGAGACCAGCTCACAAGGAAGGCAAGAGATGTGAGTATGGGAAAGCGTCCATTGTCTGATTTTGAAGACCCACGGCTAAAAGGAAAGGTTGATAAGGCAGACTTTGAAGCCATCCTACAAATTGCAGTGTTGTGTGTTGCCAAATCAAGCAAAGGTCGACCAACCATTGAGGTTGTTTTTGATGAATTGGACAAGGTCTGCATGGACACAGAAACCAAGATGAAGGTAAAGAAGGATGAGAGTTCATCATCAAACTCCACTCCCAGCTCCAAATCCTCCAAATCAGCTCCTCTTTGA 1938 0.4443 MPCGVYEAKCRYSERNNRIRGFRREKWRRSIRVPGMNGIRRDEIDKNTMVFVWTANIPVTALCNHSAPIECCFGTGSCVLKFNTSQYMAMDECVEVKEYIYSWGEDGFPTTLCCRNALTVVSNALATQALSSGGQVFLSQDQWQPCLQSFHPQPGMSLDSCGFDNLYRGSSICSNFILQDVRTLQQYQDALSRCSHFNQPFGQSCADCTGGISNVRDTLYSQVEKHNNEIDRAICGVAAIVALAAGRPNDPLVDKFLLCLPSSASGSDKSRGSLWKALLSVPVVVIVILIVVIMVKCLSKKKGGKPVDLQDITAWSGLYWFCKAEIENAMNYGGRKISLGRGSAGHVYRGVLPSGQIVAIKHLTRSNTSESFTREVEGLSRLRHPNLVCLFGCCIEGDERYLVYEFCANGNLAQHLLRRDSHLTWETRVRILRDCSFALKYLHHHMEGCVVHRDIKASNMQCKFEYVLTNILLTEKYQAKLSDFGLSKVMGIKESKVFTDVRGTIGYMDPEYMSNAKLTCASDVYSFGIVALQILSGQKVIELDLDARDQLTRKARDVSMGKRPLSDFEDPRLKGKVDKADFEAILQIAVLCVAKSSKGRPTIEVVFDELDKVCMDTETKMKVKKDESSSSNSTPSSKSSKSAPL 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01604 645 Gene3D Transferase(Phosphotransferase) domain 1 407 639 - -
Vimu2g01604 645 MobiDBLite consensus disorder prediction 628 645 - -
Vimu2g01604 645 SUPERFAMILY Protein kinase-like (PK-like) 321 609 IPR011009 -
Vimu2g01604 645 Pfam Protein kinase domain 338 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01604 645 Pfam SPARK 76 225 IPR043891 -
Vimu2g01604 645 ProSiteProfiles Protein kinase domain profile. 333 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01604 645 SMART serkin_6 333 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01604 645 MobiDBLite consensus disorder prediction 621 645 - -
Vimu2g01604 645 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 131 640 - -
Vimu2g01604 645 Gene3D Phosphorylase Kinase; domain 1 300 406 - -
Vimu2g01604 645 FunFam probable receptor-like protein kinase At5g59700 407 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01604 Vimu-Chr2 11273578 11277365 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01604 339 634 Receptor kinase-like Gene Family AT1G51800 40.199 3.26e-53 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Vimu2g01604 Pkinase 3.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01604 - - vum:124837890 991.875