Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01603 ATGAATTGTTTTCCGTGTTTTTCAAAGACTAAGAGAAGCAATAGCAGGAGGGAGCAGCAAGGGCCTACACAACACCAAGAAAACGTTATAGCAACAAAACCTCCGGACGTGAAAAAACCAAAAGCAGATGATCCAACTAATGTTGACACTTCAAATATTCAAGCACAAAATTTCACGTTCCGTGAACTGGCAATTGCAACGAAGAATTTCCGACAAGAATGTTTGATGGGTGAAGGTGGCTTTGGCAGAGTTTACAAGGGAACAATTCCTGCAACCGGGCAGGTGGTAGCAGTGAAGCAACTTGACCGAAATGGGGCGCAAGGATGTAAGGATTTTCTGGTTGAGGTTTTGATGTTAAGCCTCTTGAACCATGACAACCTCGTCAAACTCACTGGTTATTGCGCTGATGGAGATCAACGTCTTTTGGTGTATGAGTTCATGCCAGGTGGCTCGTTAGAAGCCCGTCTTCTTGAGAGGAAAGCAGATGAAGCTCCATTAGATTGGTACAGCAGAATGAAAATAGCATCAAATGCTGCGAAAGGATTGTGGTACTTGCACGACAAGGCCAACCCTTCAATCATATATCGAGACTTGAAATCTGCGAACATCTTGCTAGATGACGATTTCAATGCAAAACTATCAGATTATGGATTGGCCAAACTTGCTGGCAACGATAAGGCGAACATTGTACCCACAAGAGTTATGGGAACTTATGGTTACAGTGCTCCTGAGTACGTAAGAACAGGTAACCTCACCTTGAAATCAGATGTCTACAGTTTTGGAGTTGTCTTGCTGGAGCTCATTACTGGACGGCGTGCGGTTGACACCACAAGATCACACGATGAGCAGAATCTAGTTTCATGGGCACAACCGATATTTAGGGATCCAAAGAGATATCCAGATATGGCAGATCCAAATTTGAATAATGAATTCCCAGAAAAGGATTTGAACCAAGTTGTTGCAATTGCAGCCATGTGCTTGCAGGAGGAAGCAGCAGCCCGTCCTTTGATGAGTGATGTTGTAACTGCTCTGAGTTTTCTTTCCACTGCTTGTCCAGAGGGTGGTGGTGGCGACAACAATAGCTCCTCCGGTGAATACTCTTCTTCTAGCGGCGATGACAGTGGATCTTCTAAAAACCAGTATGATTATTATGAGAATGAAAACCAACATAATTACAGTCCTGAAGTCAGTAAAGAGACACTGCTCCAAATCGAGCCGCAAGAGCAGCACCAATTGATCATTATTTAG 1248 0.4383 MNCFPCFSKTKRSNSRREQQGPTQHQENVIATKPPDVKKPKADDPTNVDTSNIQAQNFTFRELAIATKNFRQECLMGEGGFGRVYKGTIPATGQVVAVKQLDRNGAQGCKDFLVEVLMLSLLNHDNLVKLTGYCADGDQRLLVYEFMPGGSLEARLLERKADEAPLDWYSRMKIASNAAKGLWYLHDKANPSIIYRDLKSANILLDDDFNAKLSDYGLAKLAGNDKANIVPTRVMGTYGYSAPEYVRTGNLTLKSDVYSFGVVLLELITGRRAVDTTRSHDEQNLVSWAQPIFRDPKRYPDMADPNLNNEFPEKDLNQVVAIAAMCLQEEAAARPLMSDVVTALSFLSTACPEGGGGDNNSSSGEYSSSSGDDSGSSKNQYDYYENENQHNYSPEVSKETLLQIEPQEQHQLIII 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01603 415 CDD STKc_IRAK 76 344 - -
Vimu2g01603 415 Gene3D Phosphorylase Kinase; domain 1 40 146 - -
Vimu2g01603 415 SMART serkin_6 70 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01603 415 SUPERFAMILY Protein kinase-like (PK-like) 48 347 IPR011009 -
Vimu2g01603 415 Gene3D Transferase(Phosphotransferase) domain 1 147 353 - -
Vimu2g01603 415 Pfam Protein kinase domain 72 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01603 415 FunFam probable serine/threonine-protein kinase RLCKVII 42 146 - -
Vimu2g01603 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Vimu2g01603 415 MobiDBLite consensus disorder prediction 354 397 - -
Vimu2g01603 415 FunFam Serine/threonine-protein kinase PBS1 147 360 - -
Vimu2g01603 415 MobiDBLite consensus disorder prediction 353 397 - -
Vimu2g01603 415 PANTHER OS07G0668900 PROTEIN 3 350 - -
Vimu2g01603 415 MobiDBLite consensus disorder prediction 1 50 - -
Vimu2g01603 415 ProSiteProfiles Protein kinase domain profile. 70 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01603 Vimu-Chr2 11267855 11270009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01603 1 354 Glycoside Hydrolase AT3G07070 65.014 1.06e-163 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vimu2g01603 Pkinase 2.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01603 - - var:108344327 695.656