Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01588 ATGGGAAACAATGAAGAAGAAAAATCTACCAAGACTGAAAAGCCTTCTTCACCTGCAGCAATGGATCAGGCCAATCAGACCAACCAGCCCAATATTCATGTATATCCTGATTGGGCAGCCATGCAGGCATATTATGGGCAAAGAGTCACCATGCCACCATACTACAACTCGGCTGTGGCTTCTGGTCACGCTCCTCACCCATACATGTGGGGTCCACCACAGCCTATGATGCCACCATATGGGCCTCCTTATGCAGCAATTTATTCACATGGAGGGGTTTACCCTGCAGTTCCTATCGGGCCACACACACATAGTCAAGGAGTTCCGTCTTCACCTGCTGCTGTGACTCCTTTAAGCATAGAGACACCACCCAAATCATCAGGAAATAATGATCAGGGTTTAATGAAGAAATTGAAGGAGTTTGATGGACTTGCTATGTCAATAGGCAATGGCCATGCTGAAAGTGCAGAGCGTGGAGGTGAAAACAGGCTGTCACCCAGTGTGGATACCGAGGGTTCCAGTGATGGAAGTGATGGCAACACTTCAGGGGCTAATCAAACAAGAAGGAAAAGAAGCCGTGGGGGAACACCAACCACTGATGGAGAAGGGAAAACTGAGATACAAAGCAGTCCCATTCCCAAAGACATTGCAGCTTCTAATAAGATCGTAGCAGTTGCCCCCGCTAGTGTTGCAGGAACAATAGTTGGACCTGTAGTTTCTTCAGGTATGACCACCGTGCTGGAGCTGCGAAATCCTTCCAGTGTTCATTCTAAAGCAAATACCACAAGTGCACCACAACCTTCTGTATTGCCTGCAGAAACTTGGTTACAGAATGAGCGTGAGCTGAAACGAGAGAGGCGGAAACAATCTAACCGAGAATCTGCTAGAAGGTCCAGACTAAGGAAGCAGGCTGAAACTGAAGAACTGGCACGAAAAGTTGATTCCTTGAATTCTGAGAATGAGACACTGAAATCAGAAATAAATCGACTGACTGAAAGTTCCGAAAAAATGAGGGTGGAAAATGCAACATTAAGGGAAAAACTTAAAATTGCTCGACTGGGACAAACACAAGAGATAACTTTGAACATAATTGACAGCGAGAGGGCTGCACCTGTAAGCACAGAAAACTTACTATCTAGAGTTAATAATAATTCCAGTTCCAACGATAGAACTATGGAGGATGAGAATGATTTTTGTGAAAATAAACCAAACTCTGGTGCAAAGCTGCATCAACTACTGGACACAAGTCCTAGAGCTGATGCTGTGGCAGCTGGTTGA 1278 0.4531 MGNNEEEKSTKTEKPSSPAAMDQANQTNQPNIHVYPDWAAMQAYYGQRVTMPPYYNSAVASGHAPHPYMWGPPQPMMPPYGPPYAAIYSHGGVYPAVPIGPHTHSQGVPSSPAAVTPLSIETPPKSSGNNDQGLMKKLKEFDGLAMSIGNGHAESAERGGENRLSPSVDTEGSSDGSDGNTSGANQTRRKRSRGGTPTTDGEGKTEIQSSPIPKDIAASNKIVAVAPASVAGTIVGPVVSSGMTTVLELRNPSSVHSKANTTSAPQPSVLPAETWLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVDSLNSENETLKSEINRLTESSEKMRVENATLREKLKIARLGQTQEITLNIIDSERAAPVSTENLLSRVNNNSSSNDRTMEDENDFCENKPNSGAKLHQLLDTSPRADAVAAG 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01588 425 SUPERFAMILY Leucine zipper domain 282 337 IPR046347 GO:0003700|GO:0006355
Vimu2g01588 425 MobiDBLite consensus disorder prediction 253 308 - -
Vimu2g01588 425 Coils Coil 299 347 - -
Vimu2g01588 425 MobiDBLite consensus disorder prediction 103 133 - -
Vimu2g01588 425 MobiDBLite consensus disorder prediction 1 32 - -
Vimu2g01588 425 MobiDBLite consensus disorder prediction 381 425 - -
Vimu2g01588 425 MobiDBLite consensus disorder prediction 277 308 - -
Vimu2g01588 425 Pfam bZIP transcription factor 279 341 IPR004827 GO:0003700|GO:0006355
Vimu2g01588 425 SMART brlzneu 279 343 IPR004827 GO:0003700|GO:0006355
Vimu2g01588 425 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 281 344 IPR004827 GO:0003700|GO:0006355
Vimu2g01588 425 MobiDBLite consensus disorder prediction 151 215 - -
Vimu2g01588 425 Pfam Disordered region downstream of MFMR 131 259 - -
Vimu2g01588 425 CDD bZIP_plant_GBF1 284 332 IPR045314 GO:0003700|GO:0006355
Vimu2g01588 425 MobiDBLite consensus disorder prediction 104 133 - -
Vimu2g01588 425 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 401 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vimu2g01588 425 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Vimu2g01588 425 Gene3D - 282 336 - -
Vimu2g01588 425 MobiDBLite consensus disorder prediction 14 32 - -
Vimu2g01588 425 MobiDBLite consensus disorder prediction 253 273 - -
Vimu2g01588 425 MobiDBLite consensus disorder prediction 166 206 - -
Vimu2g01588 425 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 286 301 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01588 Vimu-Chr2 11167017 11170705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01588 1 425 bZIP Transcription Factor Family AT2G46270 48.260 1.67e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu2g01588 MFMR_assoc 1.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01588 K09060 - gmx:100781875 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01588 2 11167017 11170705 Vimu9g00168 9 2021020 2024013 PCT