Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01583 ATGGAAGAAGTCAGTTTCAGTGAGGAGAAATTTGTCACTTACAAGCATGTCGACCATGGTATTTTGAATCAAACAGCAAAGGTTGTTCGGATCTCGATGGTGGATCCAGATGTCACAGATGATGAAGACGAAGGATTAGTTAAACTTCATAAGATAAAGAAGATTGTGAATGAGATCAGAATTGTGAAGAAGAAAGCTTCAAGCAGTGTGTCAGTGAAACAACACATTAAAGAGCCTGGAAGAAAGTTTAGAGGAGTTCGTCAAAGACCATGGGGAAGATGGGCAGCAGAAATCAGAGATCCTTTTAAGCAAACAAGAATCTGGTTAGGGACTTATAACACTGCTGAAGAAGCTGCCATGGTTTATGACAAAGCAGCTATTAGTTTCAGAGGTTCTCATGCTCTCACTAATTTTATCAAACCTCCTACAATGGAAGACATGCGCAAGTCTTCTACCAAAGAAGACATTCCTACAATGGAAGACATGCACAAGTTTTCTACTAAGGAAGACATGCCTACAATGGAAGACATGCACAAGTCTTCTACCAAGGAAGACATGCACATGGATGCTGTTTCTTTTGAGTATGGTTGTTATGATGAATCTCAAGGTAGTTGGAGTGATTTGGTTGAGAATGTGAGTGGTGGGACTGGTTCAAGTAGAGAGTCTCATCTGTCTTCACCCACTTCTGTGCTGGGACTTCAACATGAGAAACATGTGTCGGAAGAAGTTTTTGAAACAGAGGGTTTGTTTATAGAAGATCCAAGTTTTGAAGACACTTTCTCTTTTGTAGATTTATATTTACCATCCACTGATTTCAATTCTGGAATAGATTTTATGGCTGACACTAATGTAAAACCGTCTGATGACGATCTGTGTGATATTTCCCCTCTTGACAATGAGAATTTTCAATCATTCAACTGGGATATAGATAGTTACTTCAATGATCTTTCTTCTCCTAAGACATCTGGATGA 972 0.3909 MEEVSFSEEKFVTYKHVDHGILNQTAKVVRISMVDPDVTDDEDEGLVKLHKIKKIVNEIRIVKKKASSSVSVKQHIKEPGRKFRGVRQRPWGRWAAEIRDPFKQTRIWLGTYNTAEEAAMVYDKAAISFRGSHALTNFIKPPTMEDMRKSSTKEDIPTMEDMHKFSTKEDMPTMEDMHKSSTKEDMHMDAVSFEYGCYDESQGSWSDLVENVSGGTGSSRESHLSSPTSVLGLQHEKHVSEEVFETEGLFIEDPSFEDTFSFVDLYLPSTDFNSGIDFMADTNVKPSDDDLCDISPLDNENFQSFNWDIDSYFNDLSSPKTSG 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01583 323 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Vimu2g01583 323 Gene3D AP2/ERF domain 81 140 IPR036955 GO:0003700|GO:0006355
Vimu2g01583 323 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Vimu2g01583 323 FunFam Ethylene-responsive transcription factor 2 81 140 - -
Vimu2g01583 323 CDD AP2 82 138 IPR001471 GO:0003700|GO:0006355
Vimu2g01583 323 PIRSF PTI6 256 317 IPR017392 GO:0003700
Vimu2g01583 323 PIRSF PTI6 209 238 IPR017392 GO:0003700
Vimu2g01583 323 PIRSF PTI6 2 199 IPR017392 GO:0003700
Vimu2g01583 323 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 235 - -
Vimu2g01583 323 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Vimu2g01583 323 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Vimu2g01583 323 Pfam AP2 domain 82 131 IPR001471 GO:0003700|GO:0006355
Vimu2g01583 323 SUPERFAMILY DNA-binding domain 82 138 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01583 Vimu-Chr2 11126133 11127104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01583 1 149 AP2-EREBP Transcription Factor Family AT4G27950 40.341 2.52e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu2g01583 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01583 - - vum:124824749 589.341