Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01562 ATGCCTAGATGGACGGAGCAAGTGAAGATTTGCTCAAGAACAGGACTCGAGGGGTCTTTGGATGATGGATATAGCTGGAGGAAATACGGGCAGAAGGATATTCTTGGAGCCAAGTTTCCAAGAGGATATTACAGATGCACACATAGAAATGTTCAAGGGTGTCTGGCAACTAAACAAGTTCAAAGGTCAGATGAAGACCCGACAACAATTGAGGTGACCTATAGAGGAAGACATACTTGCACGCAAGCTAAGTATTTGAACAAGGCATTCCCATCAAACATAAAGAAGGGTTTGGGGGAAAATCAATTCCACAGTGATGAAACCAATCAACCAATTAAAGAGAAAATACAAGAAACCCCAGTGGGGATTTTCGCCTTTGAAACAGAGCATAGAGTCAAAACCGAGGAATTGGAAATCAAGGAAGATATCTTTCCATGGTTTTCATTTCCTTCTCAATCAAATGGATCAGAAAACGAGGACGTGTTACTCGAGTCTACTTTTGAAAACCATTTCACCGAAAGCTTTTCTCCTGCGTTCATATCACCAGCCACTTCAGAATCAAACCCTTTCTGTTTGTCAGCGTGCTACTTGAACAGCACTGAACTGTTATGTCAGCAGATACAAACCTCAGAGTCTGATATCACTGAGACATTTTCTGCCCCAACTTCAGTAACCAACTCCCCAATCCTGGATTTGGACATTTTGCTTCATAAAGGGGATTTTGACACGGATTTCCCTTTCAACAACCCTGACTTTTTCTCTTCATTCGAACTTCCCTGCACTTCCACTTAG 792 0.4217 MPRWTEQVKICSRTGLEGSLDDGYSWRKYGQKDILGAKFPRGYYRCTHRNVQGCLATKQVQRSDEDPTTIEVTYRGRHTCTQAKYLNKAFPSNIKKGLGENQFHSDETNQPIKEKIQETPVGIFAFETEHRVKTEELEIKEDIFPWFSFPSQSNGSENEDVLLESTFENHFTESFSPAFISPATSESNPFCLSACYLNSTELLCQQIQTSESDITETFSAPTSVTNSPILDLDILLHKGDFDTDFPFNNPDFFSSFELPCTST 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01562 263 SMART WRKY_cls 20 82 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu2g01562 263 Pfam WRKY DNA -binding domain 21 80 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu2g01562 263 Gene3D WRKY domain 7 83 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu2g01562 263 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 2 208 IPR044810 GO:0003700
Vimu2g01562 263 FunFam WRKY transcription factor 53 6 83 - -
Vimu2g01562 263 ProSiteProfiles WRKY domain profile. 15 78 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu2g01562 263 SUPERFAMILY WRKY DNA-binding domain 19 82 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01562 Vimu-Chr2 10956076 10957059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01562 1 150 WRKY Transcription Factor Family AT4G23810 48.344 1.22e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu2g01562 WRKY 3.2e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01562 - - gmx:100790050 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01562 2 10956076 10957059 Vimu9g00133 9 1548217 1548774 PCT