Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01551 ATGGCTTCCATAATTATTAACTGCATCTCCACAATATTAGAAAAAGATTCAAATATCCTTCACCGCCATACAAGTGCCACCGCTTCCACCAGTCACCGCCTCAGTGCTGCTGTAGAGGGAGTTGCAGAGGAGGAATACCAGAAAAGAAATTGGAAATCGGAGTCATCTTTTAGCATAGAGCAAAACGATCACAAAAGAAGACCAAGTGTGATTGAAGTTTTGAAGAGTATAGGAAGAAGGGTTGAGGGTAGTTCAGAGAAGATGAAGAACTTGAGAAGAGTTTCAGCTGTTCATCCCTTAAGTGATGGACAGAAAAAGCTGCCACCTAGGAAGAAAATTCTTGATCCACAGAGTTCAATGCTTCAGAAATGGAACAAAATCTTTGTAATTTCGTGTGTGTTGGCAGTCTCTGTGGACCCGTTCTTCTTTTACATTCCAGTGATTGATAATGAGCAAAAATGCCTTAATTTGAGTGGGTCATTGCAGATCACTGCCAGTGTTTTTCGCACCTTCTTTGATCTATTCTACATTCTTCGCATAATCTTTCAGTTTAAGACGGGGTTTATTCCCCCTTCTTCTCGTGTTTTTGGAAGGGGTGAGCTCGTTGATGATCCTGTGGCTATAACGAAAAGATACTTAACTTCATACTTCATCATCGACATTCTATCAATTATTCCACTTCCACAGGTGATTGTTTTAGCCATACATCCAAACATGAAAACAGATCCATTTGTAGCAAAGGATTTGTTGAAGTATTCTGTATTAATCCAGTATGTGCCAAGGCTTCTGCGGATCCATCCACTGTTCAAAGAAGTAACTAGAACTTCTGGCATATTGACTGAGACAGCAGGGGCTGGAGCTGCTTATAATCTTTTTCTTTATATGCTAGCAAGTCATGTAGTTGGAGCTTTCTGGTATTTGCTCTCAGTAGAGTCAGAGCTGCGTTGCTGGCGCAGACAGGTGAAGGGTGTAGACTTGAGTTGTAGAAACCGCACCCCAGAAAAAATTTCAGCTCTCAATCAAACTTGTTCTTTGGTGGATCCTGAAGATATCAAAGACCGAGAAAGCTACAACTTTGGAATCTTTTTTGATGCTTTACATTCAGGTGTGGTAAAATCAACCACAGATTTTCCTGAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCTCTTGGACAAGATCTCAAGACAAGCACTTATGTGCCAGAGATTATATTTGCAATCTTCATTGCCATCTTTGGATTAGTTTTATTCTCGTTACTTATTGGAAACATGCAGAAATATTTGCAATCTACAACTGTTAGAGTGGAGGAGATGAGAGTGAAGAGACAGGACGCAGAACAGTGGATGTCTCACCGTATGCTACCTGAGAACTTGAAGGAAAGAATTAGACAGTATGAACAGTATCAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGGCATTGATTCGTAACCTTCCTAAAGATCTCAGAAGGGACATAAAGCGTCACCTTTGTCTATCTTTGGTTATAAAGGTGCCAATGTTTGAGAAAATGGATGAGCAGTTGTTGGATGCAATTTGCACTAGACTGAAGCCAGTCCTTTATACTGAGAAGAGCCAAATTTTTCGTGAAGGAGACCCAGTTGATGAGATGCTTTTCATTATGCGTGGAAAAGTCTCTACTGTGACGACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTTGTTTCTGGAAGCTGGTGCATTCTGCGGAGAGGAGCTTCTGACATGGGCCTTGGATCCTAACTCCTCCTCGAATCTTCCCATTTCAACTAGGACAGTGGAAACCATATCAGAAGTTGAAGCCTTTGCTCTCATGGCGGATGATTTGAAGCTTGTTGCCTCCCAATTTCGCCGCCTTAGTAGCAAGCAGCTCCAACACGCTTTCAGGCAAGAATTCTGGAAGACATGGGCTGCATGTTTCATACAAGCAGCTTGGCGTCGATACTGGAAAAAGAAGGCTGAGAGGTCTTTGCACGTAGAAGAAGACAAGCTACAAGATGCTTTGACAAATGATGACGGCGCTACTCTGAGCCTTGGCGCAACGATATATGCATCAAGGTTTGCTGCCAATGCACTGCGAAACCTGAGAGAAAACAACAGACAGAATAGAATGCAACAGAGACTACTGCCTCTGCTACCTCCAAAGCCAGCCGAGCCAGACTTCACTTCTCTGAAACACTAA 2217 0.424 MASIIINCISTILEKDSNILHRHTSATASTSHRLSAAVEGVAEEEYQKRNWKSESSFSIEQNDHKRRPSVIEVLKSIGRRVEGSSEKMKNLRRVSAVHPLSDGQKKLPPRKKILDPQSSMLQKWNKIFVISCVLAVSVDPFFFYIPVIDNEQKCLNLSGSLQITASVFRTFFDLFYILRIIFQFKTGFIPPSSRVFGRGELVDDPVAITKRYLTSYFIIDILSIIPLPQVIVLAIHPNMKTDPFVAKDLLKYSVLIQYVPRLLRIHPLFKEVTRTSGILTETAGAGAAYNLFLYMLASHVVGAFWYLLSVESELRCWRRQVKGVDLSCRNRTPEKISALNQTCSLVDPEDIKDRESYNFGIFFDALHSGVVKSTTDFPEKFFYCFWWGLRNLSSLGQDLKTSTYVPEIIFAIFIAIFGLVLFSLLIGNMQKYLQSTTVRVEEMRVKRQDAEQWMSHRMLPENLKERIRQYEQYQWQENRGVEEEALIRNLPKDLRRDIKRHLCLSLVIKVPMFEKMDEQLLDAICTRLKPVLYTEKSQIFREGDPVDEMLFIMRGKVSTVTTNGGRTGFFNSLFLEAGAFCGEELLTWALDPNSSSNLPISTRTVETISEVEAFALMADDLKLVASQFRRLSSKQLQHAFRQEFWKTWAACFIQAAWRRYWKKKAERSLHVEEDKLQDALTNDDGATLSLGATIYASRFAANALRNLRENNRQNRMQQRLLPLLPPKPAEPDFTSLKH 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01551 738 SMART cnmp_10 512 643 IPR000595 -
Vimu2g01551 738 CDD CAP_ED 512 641 IPR000595 -
Vimu2g01551 738 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 100 733 - -
Vimu2g01551 738 FunFam Cyclic nucleotide-gated ion channel 1 510 628 - -
Vimu2g01551 738 Coils Coil 662 682 - -
Vimu2g01551 738 Gene3D - 126 436 - -
Vimu2g01551 738 ProSiteProfiles cAMP/cGMP binding motif profile. 512 596 IPR000595 -
Vimu2g01551 738 FunFam Cyclic nucleotide-gated ion channel 1 439 503 - -
Vimu2g01551 738 Gene3D Helix hairpin bin 439 503 - -
Vimu2g01551 738 SUPERFAMILY Voltage-gated potassium channels 115 434 - -
Vimu2g01551 738 Pfam Cyclic nucleotide-binding domain 533 622 IPR000595 -
Vimu2g01551 738 Gene3D Jelly Rolls 510 630 IPR014710 -
Vimu2g01551 738 Pfam Ion transport protein 124 440 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vimu2g01551 738 SUPERFAMILY cAMP-binding domain-like 441 635 IPR018490 -
Vimu2g01551 738 MobiDBLite consensus disorder prediction 715 738 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01551 Vimu-Chr2 10802301 10808017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01551 79 735 Ion Channels AT5G53130 64.680 0.0 869
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01551 K05391 - gmx:100797784 1109.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01551 2 10802301 10808017 Vimu9g00117 9 1369707 1371378 PCT