Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01549 ATGGAGCAGCAGGACAGCAAGATGTACAACCTGTTCGTGAAACACTTAGATGGAAAAACCCTAACCCTCTTATTTCCCTCTCCGATCATCTACGTGAGTTTCATCAAGGATCGCCTTTTCGAACTCACTGGAATTCCCGTGCAGCACCAGCGCCTCGTCACCGGCTTCCGACACCTCAACGACGTAATCCAATGCTCCCCGGAAGATGGCAACATGTTCCCGTCCGTGCGGCTGCTGCTGCGTCTCAAAGGCGGAAAGGGAGGCTTTGGGTCGCTTCTTCGTGGTGCCGCGACGAAGGCCGGGCAGAAAAAGACCAACAATTTCGACGCCTGTCGGGACATGAGTGGTCGGAGGCTGAGGCACGTCAACGCCGAGAAGAGGTTAGAGGAGTGGAAGGCCGGAGAAGAGGAGAGAAGGCTCGAGAAGGTGGCGGAGGAGTTTCTCAAGAAGCAAATGAAGAAGAGTAAGGGTAAGGGAAAGGCTCAAGGGGATGGTGAAGCTCACAAATACGTGGAGAAATATCGGGAGGAATCTGAACGTTGCGTTGCGGAGGTTGCCTTGTCCGTTAAGGAGGCTCTCACTGCCAAACGCAAGATCCCTTCACAACCCCAACACGATGCCAAGAAGTTGAAGATATGGATGGGGAAGAGGAAATTGAACGAAAGTGATAGTGATTATAGTGATGATTCTGATGTAGAGGGGGAAATGGAGAAATCAGATTTATTGAATGATCACAATGAGTCTGATTCAACTAAGGCTGAGGGCAGTCTGGGTTCGGTGGCTGGCGGAGGAGGCGCCTCTGGTTCCGCCTCGTGTGAAAGTGGCTCTGAGGAAGAGAAGGAAACTGTTGTACAAGGAAATGTGGGATTTGTTGGGTTGCTGAGTGATGAAAGTATTCAGCCAATGGACGAGCCTGTGATAAGCAATGATGCTACTGCAATGCGAAATGAGTCAGTGGTGTCTGCACTTATTGTGGAAGAAAATGGACATCAGGATTGCCATGGAGGTGTGTCTGTTAAGTTTGATGGTGCTGTGAATCAGGTCTCAAATATTACAGGCTCTGAAACTGTGGCCGCTGGCGACTCTAATAATGATATGGAAATTGATGGATCACTTGAGCATGAAGCAGCAGTCAATGAAGAGAGCTCGCCAAGCACTAGTGTTCCCGCAATGGATGAGCCCCTTAATTTTGATTCCTTTAATTCCTCTTCCGAACTAGAGGTTATTGGCTTGGAAAGGTTGAAGTGTGAACTGCAGTCGCGTGGGTTAAAATGTGGAGGTACTTTGAAGGAGCGGGCTGCCAGACTGTTTCTTCTAAAATCTACCCCTCTGGATAAACTTCCAAAGAAGCTGCTCGCTAAGAAGTAA 1368 0.4927 MEQQDSKMYNLFVKHLDGKTLTLLFPSPIIYVSFIKDRLFELTGIPVQHQRLVTGFRHLNDVIQCSPEDGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKAGEEERRLEKVAEEFLKKQMKKSKGKGKAQGDGEAHKYVEKYREESERCVAEVALSVKEALTAKRKIPSQPQHDAKKLKIWMGKRKLNESDSDYSDDSDVEGEMEKSDLLNDHNESDSTKAEGSLGSVAGGGGASGSASCESGSEEEKETVVQGNVGFVGLLSDESIQPMDEPVISNDATAMRNESVVSALIVEENGHQDCHGGVSVKFDGAVNQVSNITGSETVAAGDSNNDMEIDGSLEHEAAVNEESSPSTSVPAMDEPLNFDSFNSSSELEVIGLERLKCELQSRGLKCGGTLKERAARLFLLKSTPLDKLPKKLLAKK 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01549 455 MobiDBLite consensus disorder prediction 220 283 - -
Vimu2g01549 455 MobiDBLite consensus disorder prediction 236 251 - -
Vimu2g01549 455 ProSiteProfiles Ubiquitin domain profile. 9 85 IPR000626 GO:0005515
Vimu2g01549 455 PANTHER SPLICING FACTOR SF3A-RELATED 10 454 - -
Vimu2g01549 455 Pfam Replication stress response SDE2 C-terminal 380 454 IPR025086 -
Vimu2g01549 455 SUPERFAMILY Ubiquitin-like 4 83 IPR029071 -
Vimu2g01549 455 Pfam Silencing defective 2 N-terminal ubiquitin domain 68 156 IPR024974 -
Vimu2g01549 455 Gene3D - 2 86 - -
Vimu2g01549 455 CDD Ubl_ubiquitin_like 11 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01549 Vimu-Chr2 10791512 10794939 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01549 388 454 C2H2 Transcription Factor Family AT5G06160 44.776 5.36e-10 59.7