Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01548 ATGAACTTCTTGAAGGTCCTGTTCCACTGCTTCATACCTTTTGCTGTCGCATATGCATCATCTGATTGCCAATATTATTCTTGGTGCAGCGACAACAACATCCTTATTCGTTTTCCCTTCCAAATAGAAGGTCAGCAACATCCTTATTGTGGCTATCCTGGTTTCAAACTAACTTGTTCCAATGATAGCAAAACTGTTATAACACTTCCTTACATGGGAAAGTTCTTTGTCCGCAACATTAACTACATCAGACAACAGATGCAAGTGTACGACCCAGATGATTGCCTTCCAAAACGTCTTCTAAGCTTCAACCTTTCAGCTTCTCCCTTCACTGTCACTTCACTCCGGAACTACACCCTCTTAAGCTGCCCAACTCGCCACACAGGGTCGCAGTTCATTCCCATTGACTGTCTTAGCAATTCAACGTCTTTTGTCTCAGCTATTCCTTCACTGAACTTCACTTCATTGCCCGAGTCTTGCCATGTTGTAAAGAAACTATCATTTCCAGTTGCATACCAGGAAAATCTCAGAGATGATCTCCTTCGTGGAGATCTTCTATTAACATGGTATTCACCTGACTGTAGATATTGCGAATCACAACAAGCTCTGTGTGGATTTGATGAGAACATAAACAGTGATCAAGTTGGTTGTTTCTTTGATGACCAAACTGGACGTCAAGAACATGGTCTTCGAGTTTTTGGAATCATCACATTATCCATCGTTGGACCAGCTATCGTGTGTGCCATTGCAATGACATGCTACGCCACCTTCAGGTACAGAATAGGCAACACAGCGAGAATTGCTGCAGCACAGAGGTCTGCAGCTACTGAAATACCGGAATCTGCCACCGTCAGGATGGGTCTGGATGAGTCTACAATCGAGTCGTATCAGAAACTGGAGTTAGGGGAGAGCCGAAGAGTGCCAGGACCCAATGAGGGATGTTGCACCATATGTCTGTCAGAGTATAAAACCAAAGACACTATAAGATGTATTCCTGAATGCGCACATTGCTACCATGCTCACTGCATCGATGAATGGCTTCGCATCAACACCACATGCCCTCTTTGCCGCAACTCTCCCTCTACAGTTCTAGCTATGTCCAGTGATCATTGA 1113 0.4429 MNFLKVLFHCFIPFAVAYASSDCQYYSWCSDNNILIRFPFQIEGQQHPYCGYPGFKLTCSNDSKTVITLPYMGKFFVRNINYIRQQMQVYDPDDCLPKRLLSFNLSASPFTVTSLRNYTLLSCPTRHTGSQFIPIDCLSNSTSFVSAIPSLNFTSLPESCHVVKKLSFPVAYQENLRDDLLRGDLLLTWYSPDCRYCESQQALCGFDENINSDQVGCFFDDQTGRQEHGLRVFGIITLSIVGPAIVCAIAMTCYATFRYRIGNTARIAAAQRSAATEIPESATVRMGLDESTIESYQKLELGESRRVPGPNEGCCTICLSEYKTKDTIRCIPECAHCYHAHCIDEWLRINTTCPLCRNSPSTVLAMSSDH 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01548 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 362 IPR013083 -
Vimu2g01548 370 SMART ring_2 315 356 IPR001841 -
Vimu2g01548 370 Pfam Ring finger domain 315 357 IPR001841 -
Vimu2g01548 370 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 361 IPR046948 -
Vimu2g01548 370 Pfam Wall-associated receptor kinase galacturonan-binding 23 91 IPR025287 GO:0030247
Vimu2g01548 370 SUPERFAMILY RING/U-box 314 360 - -
Vimu2g01548 370 ProSiteProfiles Zinc finger RING-type profile. 315 357 IPR001841 -
Vimu2g01548 370 CDD RING-H2_EL5-like 314 357 - -
Vimu2g01548 370 Pfam Wall-associated receptor kinase C-terminal 174 222 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01548 Vimu-Chr2 10788253 10790496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01548 29 361 C3H Transcription Factor Family AT2G25410 43.275 5.01e-91 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01548 - - gmx:100799895 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01548 2 10788253 10790496 Vimu9g00111 9 1331701 1332069 PCT