Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01543 CGTGTTGGTGTTTGTGTTATGAGCGAGAGAATGGAATCCAGTAGCATTGAGAGCAGCACTGTGTCTTCGATGACTATGATGGAGGATGATGAACATCCTCATCAGTTTTCTTCAATCTCGAAGCTGCATAACAATGGCCCCACCACTACCAGTGTCCACGACCTTCTTGAATGCCCTGTCTGCACCAACTCCATGTACCCTCCAATTCATCAGATCTCATATTTTGCTGTAATTTCAGTTTGTATGATTCCGCAAATGAGGGTTGAAGATTTGGTTACTATGATGGGTTACTTTGATCAAAGATTCTATCTGGCTAGTTTTTCTTTTCTGAGGCCTACTCAGGTCAATTTTTTAGACTTACAGAAGCGATTAATTCTTGAAACAAATTTTACTATGCAGTGCCACAACGGGCACACGCTTTGTTCAACTTGCAAGACAAGGGTACACAACCGATGCCCAACTTGCAGGCAGGAGCTCGGAGATATAAGATGTTTGGCATTAGAGAAGATAGCAGAATCACTTGAGCTGCCATGTAGATATATCTCTCTTGGGTGTCCAGAGATATTTCCTTATTACAGCAAACTCAAACATGAGGCTATTTGTAACTTCAGACCATATAACTGTCCTTATGCCGGGTCTGACTGTTCTGTGGTCGGGGATATTCCATGCCTTGTTGCTCATTTAAGGGATGACCACAGGGTTGATATGCATTCTGGATGCACTTTCAACCATCGCTATGTAAAGTCTAATCCCATGGAAGTGGAAAATGCTACATGGATGCTAACGGTTTTCCATTGTTTTGGGCAATATTTTTGCCTCCATTTTGAGGCCTTCCAGCTTGGCATGGCTCCGGTGTACATGGCATTCCTCCGATTCATGGGTGACGAAAGAGAGGCGAGAAACTACAGCTACAGTCTGGAGGTGGGTGGAAATGGACGAAAACTAACTTTTGAGGGAAGTCCAAGAAGCATTAGAGATAGTCATAAGAAAGTGAGAGACAGTCATGATGGTCTCATCATTTACCGGAACATGGCGCTTTTCTTCTCAGGTGGAGACAGGAAAGAGTTGAAGCTACGAGTAACAGGAAGGATATGGAAAGAACAGCAAAACCCTGAAGGTGGAGTGTGCATACCCAACCTCTGTAGCTAG 1149 0.4386 RVGVCVMSERMESSSIESSTVSSMTMMEDDEHPHQFSSISKLHNNGPTTTSVHDLLECPVCTNSMYPPIHQISYFAVISVCMIPQMRVEDLVTMMGYFDQRFYLASFSFLRPTQVNFLDLQKRLILETNFTMQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYISLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSDCSVVGDIPCLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARNYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVRDSHDGLIIYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCIPNLCS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01543 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 228 IPR013083 -
Vimu2g01543 382 CDD Sina 234 362 - -
Vimu2g01543 382 FunFam E3 ubiquitin-protein ligase SINAT5-like 229 361 - -
Vimu2g01543 382 Pfam Seven in absentia protein family 162 361 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vimu2g01543 382 SUPERFAMILY TRAF domain-like 173 365 - -
Vimu2g01543 382 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 237 361 IPR008974 GO:0005515
Vimu2g01543 382 FunFam E3 ubiquitin-protein ligase SINAT3 170 228 - -
Vimu2g01543 382 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 32 367 - -
Vimu2g01543 382 ProSiteProfiles Zinc finger SIAH-type profile. 173 233 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01543 Vimu-Chr2 10741381 10745050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01543 133 368 C3H Transcription Factor Family AT2G41980 79.661 3.42e-144 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01543 K04506 - gmx:100782764 541.962