LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu2g01539	ATGGAATCAGAAATTCAAAGAAAAATAGAGGAAACAGTGTTGGACATACTGAACAAATCCAACATGGAAGAAGCCACTGAGTTCGGCATACGACTCGCTGCCTCGGAGAGACTCGGTATCGACCTCTCGGACTCCATCAGTAAACACTTTGTTAGAAGCATAGTTGAGTCGTATCTTCTCTCCATTATGGCCAATGGAAAGGCGGAGAAGAAGGAAAATGTAGTCAGTGTCGATGAGGAGACGGAGGTGGTGAAACTGAAGAGGGAAGATCCTGAACGTATTATTTGTCATCTGTCGAATAGGAGGAACGTATCCGTGAAAGCATTCAAAGGGACGTCACTAGTCTCAATTAGGGAGTTCTATATGAAAGATGGAAAACTACTTCCTGGTTGTAAAGGTATTAGTTTACCTTCTGAGCAATGGTCAATCTTCAAGGAGAGTGTTCCTGCAATAGAAGAAGCTATCTTAAAGATGGAAGGAAGGATGAGATCGGAGCTTAATGGTAAGCAACATGAAGATGAGTCAAAATCGGTTGCTGCGGCTGCTCCTCTTGAGCCTGTTGTCCCTGTTCCTCCACTTGAGCCTATAGTCCCTATTGAAGTTGTCCGTTTTGATGGGAAGAATTTCCATTTCTGGGCTCAGCAGATGAAATCACTATTGAAACAATTAAAGATTGAACATGTACTAATTGAACCATGCCCGAGTGCTGCATTAGGGGAAGGTGCAAAGGCTGAAGACATTGCTGCAGCCAAGGCTGCAGAAAGGAGATGGTTAAATGATGATGTAGTGTGTTGCCGCAATATCTTGAGCCATTTATCTGATCCTCTTTTCAACCAGTATGTGAACAGAAAAATGAGCAGCAAGGAATTATGGGAAGAGCTAAAAATGGTTTATCTGTATGAGGAATTTGGAACCAAGAGATCTCAAGTGAAAAAGTATATTGAATTTCAGATAGTTGATGAAAAAACAGTGATTGAGCAAGTCCGAGACCTAAATGGCATTGCAGATTCTATTGCTGCTTCTGGAATATTCATTGACGATAACTTTCATGTTAGTGTCATCATTTCAAAGCTTCCACCATCCTGGAAGAACTTCTGCATCAGGTTATTGCGTGAGGAATATTTACCTTTCTGGAAGTTAATGGAATGTATACAGGTAGAGGAAGAATTTCGGTGTGGAGTACAACGAGGGGGTGAACATTCTTACAGTATGGGATTTCAACCGGGCAGTAGAGGTGGTGGACAGAGGAGCGTTGACTATAAGCCACCAGGAATCCGGAGGAATAGGCCAGAAATCAATGCCAGGAGCTTATCCTGTAATGTATGTGGCAAGAGGGGACATCTTTCAAAAAATTGTTGGAGAAGAAGTGACAGGCAAACTAATGAAAGGAGAGCAGAAGATGATGTCAGCACATCTACCACAGAAGTTGATACTCAGGCTTCTATTCCTACCGAGTAA	1458	0.4239	MESEIQRKIEETVLDILNKSNMEEATEFGIRLAASERLGIDLSDSISKHFVRSIVESYLLSIMANGKAEKKENVVSVDEETEVVKLKREDPERIICHLSNRRNVSVKAFKGTSLVSIREFYMKDGKLLPGCKGISLPSEQWSIFKESVPAIEEAILKMEGRMRSELNGKQHEDESKSVAAAAPLEPVVPVPPLEPIVPIEVVRFDGKNFHFWAQQMKSLLKQLKIEHVLIEPCPSAALGEGAKAEDIAAAKAAERRWLNDDVVCCRNILSHLSDPLFNQYVNRKMSSKELWEELKMVYLYEEFGTKRSQVKKYIEFQIVDEKTVIEQVRDLNGIADSIAASGIFIDDNFHVSVIISKLPPSWKNFCIRLLREEYLPFWKLMECIQVEEEFRCGVQRGGEHSYSMGFQPGSRGGGQRSVDYKPPGIRRNRPEINARSLSCNVCGKRGHLSKNCWRRSDRQTNERRAEDDVSTSTTEVDTQASIPTE	485

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu2g01539	485	Gene3D	Transcriptional Coactivator Pc4; Chain A	86	162	IPR009044	GO:0003677\|GO:0006355
	Vimu2g01539	485	ProSiteProfiles	DEK C-terminal (DEK-C) domain profile.	3	60	IPR014876	-
	Vimu2g01539	485	SUPERFAMILY	Retrovirus zinc finger-like domains	424	458	IPR036875	GO:0003676\|GO:0008270
	Vimu2g01539	485	Pfam	DEK C terminal domain	7	59	IPR014876	-
	Vimu2g01539	485	MobiDBLite	consensus disorder prediction	454	471	-	-
	Vimu2g01539	485	SUPERFAMILY	ssDNA-binding transcriptional regulator domain	95	156	IPR009044	GO:0003677\|GO:0006355
	Vimu2g01539	485	ProSiteProfiles	Zinc finger CCHC-type profile.	439	452	IPR001878	GO:0003676\|GO:0008270
	Vimu2g01539	485	MobiDBLite	consensus disorder prediction	454	485	-	-
	Vimu2g01539	485	Pfam	Transcriptional Coactivator p15 (PC4)	96	146	IPR003173	GO:0003677\|GO:0006355
	Vimu2g01539	485	Pfam	gag-polypeptide of LTR copia-type	259	388	-	-
	Vimu2g01539	485	MobiDBLite	consensus disorder prediction	405	427	-	-
	Vimu2g01539	485	PANTHER	RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR	3	160	IPR045125	GO:0003713\|GO:0060261

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu2g01539	Vimu-Chr2	10715333	10718153	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Coactivator p15	Vimu2g01539		Retrotran_gag_2	2e-12	CL0523

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu2g01539	-		-	var:108341934	866.685