Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01539 ATGGAATCAGAAATTCAAAGAAAAATAGAGGAAACAGTGTTGGACATACTGAACAAATCCAACATGGAAGAAGCCACTGAGTTCGGCATACGACTCGCTGCCTCGGAGAGACTCGGTATCGACCTCTCGGACTCCATCAGTAAACACTTTGTTAGAAGCATAGTTGAGTCGTATCTTCTCTCCATTATGGCCAATGGAAAGGCGGAGAAGAAGGAAAATGTAGTCAGTGTCGATGAGGAGACGGAGGTGGTGAAACTGAAGAGGGAAGATCCTGAACGTATTATTTGTCATCTGTCGAATAGGAGGAACGTATCCGTGAAAGCATTCAAAGGGACGTCACTAGTCTCAATTAGGGAGTTCTATATGAAAGATGGAAAACTACTTCCTGGTTGTAAAGGTATTAGTTTACCTTCTGAGCAATGGTCAATCTTCAAGGAGAGTGTTCCTGCAATAGAAGAAGCTATCTTAAAGATGGAAGGAAGGATGAGATCGGAGCTTAATGGTAAGCAACATGAAGATGAGTCAAAATCGGTTGCTGCGGCTGCTCCTCTTGAGCCTGTTGTCCCTGTTCCTCCACTTGAGCCTATAGTCCCTATTGAAGTTGTCCGTTTTGATGGGAAGAATTTCCATTTCTGGGCTCAGCAGATGAAATCACTATTGAAACAATTAAAGATTGAACATGTACTAATTGAACCATGCCCGAGTGCTGCATTAGGGGAAGGTGCAAAGGCTGAAGACATTGCTGCAGCCAAGGCTGCAGAAAGGAGATGGTTAAATGATGATGTAGTGTGTTGCCGCAATATCTTGAGCCATTTATCTGATCCTCTTTTCAACCAGTATGTGAACAGAAAAATGAGCAGCAAGGAATTATGGGAAGAGCTAAAAATGGTTTATCTGTATGAGGAATTTGGAACCAAGAGATCTCAAGTGAAAAAGTATATTGAATTTCAGATAGTTGATGAAAAAACAGTGATTGAGCAAGTCCGAGACCTAAATGGCATTGCAGATTCTATTGCTGCTTCTGGAATATTCATTGACGATAACTTTCATGTTAGTGTCATCATTTCAAAGCTTCCACCATCCTGGAAGAACTTCTGCATCAGGTTATTGCGTGAGGAATATTTACCTTTCTGGAAGTTAATGGAATGTATACAGGTAGAGGAAGAATTTCGGTGTGGAGTACAACGAGGGGGTGAACATTCTTACAGTATGGGATTTCAACCGGGCAGTAGAGGTGGTGGACAGAGGAGCGTTGACTATAAGCCACCAGGAATCCGGAGGAATAGGCCAGAAATCAATGCCAGGAGCTTATCCTGTAATGTATGTGGCAAGAGGGGACATCTTTCAAAAAATTGTTGGAGAAGAAGTGACAGGCAAACTAATGAAAGGAGAGCAGAAGATGATGTCAGCACATCTACCACAGAAGTTGATACTCAGGCTTCTATTCCTACCGAGTAA 1458 0.4239 MESEIQRKIEETVLDILNKSNMEEATEFGIRLAASERLGIDLSDSISKHFVRSIVESYLLSIMANGKAEKKENVVSVDEETEVVKLKREDPERIICHLSNRRNVSVKAFKGTSLVSIREFYMKDGKLLPGCKGISLPSEQWSIFKESVPAIEEAILKMEGRMRSELNGKQHEDESKSVAAAAPLEPVVPVPPLEPIVPIEVVRFDGKNFHFWAQQMKSLLKQLKIEHVLIEPCPSAALGEGAKAEDIAAAKAAERRWLNDDVVCCRNILSHLSDPLFNQYVNRKMSSKELWEELKMVYLYEEFGTKRSQVKKYIEFQIVDEKTVIEQVRDLNGIADSIAASGIFIDDNFHVSVIISKLPPSWKNFCIRLLREEYLPFWKLMECIQVEEEFRCGVQRGGEHSYSMGFQPGSRGGGQRSVDYKPPGIRRNRPEINARSLSCNVCGKRGHLSKNCWRRSDRQTNERRAEDDVSTSTTEVDTQASIPTE 485
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01539 485 Gene3D Transcriptional Coactivator Pc4; Chain A 86 162 IPR009044 GO:0003677|GO:0006355
Vimu2g01539 485 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 3 60 IPR014876 -
Vimu2g01539 485 SUPERFAMILY Retrovirus zinc finger-like domains 424 458 IPR036875 GO:0003676|GO:0008270
Vimu2g01539 485 Pfam DEK C terminal domain 7 59 IPR014876 -
Vimu2g01539 485 MobiDBLite consensus disorder prediction 454 471 - -
Vimu2g01539 485 SUPERFAMILY ssDNA-binding transcriptional regulator domain 95 156 IPR009044 GO:0003677|GO:0006355
Vimu2g01539 485 ProSiteProfiles Zinc finger CCHC-type profile. 439 452 IPR001878 GO:0003676|GO:0008270
Vimu2g01539 485 MobiDBLite consensus disorder prediction 454 485 - -
Vimu2g01539 485 Pfam Transcriptional Coactivator p15 (PC4) 96 146 IPR003173 GO:0003677|GO:0006355
Vimu2g01539 485 Pfam gag-polypeptide of LTR copia-type 259 388 - -
Vimu2g01539 485 MobiDBLite consensus disorder prediction 405 427 - -
Vimu2g01539 485 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 3 160 IPR045125 GO:0003713|GO:0060261
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vimu2g01539 Vimu-Chr2 10715333 10718153 Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Vimu2g01539 Retrotran_gag_2 2e-12 CL0523
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01539 - - var:108341934 866.685