Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu2g01539 | ATGGAATCAGAAATTCAAAGAAAAATAGAGGAAACAGTGTTGGACATACTGAACAAATCCAACATGGAAGAAGCCACTGAGTTCGGCATACGACTCGCTGCCTCGGAGAGACTCGGTATCGACCTCTCGGACTCCATCAGTAAACACTTTGTTAGAAGCATAGTTGAGTCGTATCTTCTCTCCATTATGGCCAATGGAAAGGCGGAGAAGAAGGAAAATGTAGTCAGTGTCGATGAGGAGACGGAGGTGGTGAAACTGAAGAGGGAAGATCCTGAACGTATTATTTGTCATCTGTCGAATAGGAGGAACGTATCCGTGAAAGCATTCAAAGGGACGTCACTAGTCTCAATTAGGGAGTTCTATATGAAAGATGGAAAACTACTTCCTGGTTGTAAAGGTATTAGTTTACCTTCTGAGCAATGGTCAATCTTCAAGGAGAGTGTTCCTGCAATAGAAGAAGCTATCTTAAAGATGGAAGGAAGGATGAGATCGGAGCTTAATGGTAAGCAACATGAAGATGAGTCAAAATCGGTTGCTGCGGCTGCTCCTCTTGAGCCTGTTGTCCCTGTTCCTCCACTTGAGCCTATAGTCCCTATTGAAGTTGTCCGTTTTGATGGGAAGAATTTCCATTTCTGGGCTCAGCAGATGAAATCACTATTGAAACAATTAAAGATTGAACATGTACTAATTGAACCATGCCCGAGTGCTGCATTAGGGGAAGGTGCAAAGGCTGAAGACATTGCTGCAGCCAAGGCTGCAGAAAGGAGATGGTTAAATGATGATGTAGTGTGTTGCCGCAATATCTTGAGCCATTTATCTGATCCTCTTTTCAACCAGTATGTGAACAGAAAAATGAGCAGCAAGGAATTATGGGAAGAGCTAAAAATGGTTTATCTGTATGAGGAATTTGGAACCAAGAGATCTCAAGTGAAAAAGTATATTGAATTTCAGATAGTTGATGAAAAAACAGTGATTGAGCAAGTCCGAGACCTAAATGGCATTGCAGATTCTATTGCTGCTTCTGGAATATTCATTGACGATAACTTTCATGTTAGTGTCATCATTTCAAAGCTTCCACCATCCTGGAAGAACTTCTGCATCAGGTTATTGCGTGAGGAATATTTACCTTTCTGGAAGTTAATGGAATGTATACAGGTAGAGGAAGAATTTCGGTGTGGAGTACAACGAGGGGGTGAACATTCTTACAGTATGGGATTTCAACCGGGCAGTAGAGGTGGTGGACAGAGGAGCGTTGACTATAAGCCACCAGGAATCCGGAGGAATAGGCCAGAAATCAATGCCAGGAGCTTATCCTGTAATGTATGTGGCAAGAGGGGACATCTTTCAAAAAATTGTTGGAGAAGAAGTGACAGGCAAACTAATGAAAGGAGAGCAGAAGATGATGTCAGCACATCTACCACAGAAGTTGATACTCAGGCTTCTATTCCTACCGAGTAA | 1458 | 0.4239 | MESEIQRKIEETVLDILNKSNMEEATEFGIRLAASERLGIDLSDSISKHFVRSIVESYLLSIMANGKAEKKENVVSVDEETEVVKLKREDPERIICHLSNRRNVSVKAFKGTSLVSIREFYMKDGKLLPGCKGISLPSEQWSIFKESVPAIEEAILKMEGRMRSELNGKQHEDESKSVAAAAPLEPVVPVPPLEPIVPIEVVRFDGKNFHFWAQQMKSLLKQLKIEHVLIEPCPSAALGEGAKAEDIAAAKAAERRWLNDDVVCCRNILSHLSDPLFNQYVNRKMSSKELWEELKMVYLYEEFGTKRSQVKKYIEFQIVDEKTVIEQVRDLNGIADSIAASGIFIDDNFHVSVIISKLPPSWKNFCIRLLREEYLPFWKLMECIQVEEEFRCGVQRGGEHSYSMGFQPGSRGGGQRSVDYKPPGIRRNRPEINARSLSCNVCGKRGHLSKNCWRRSDRQTNERRAEDDVSTSTTEVDTQASIPTE | 485 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu2g01539 | 485 | Gene3D | Transcriptional Coactivator Pc4; Chain A | 86 | 162 | IPR009044 | GO:0003677|GO:0006355 | |
Vimu2g01539 | 485 | ProSiteProfiles | DEK C-terminal (DEK-C) domain profile. | 3 | 60 | IPR014876 | - | |
Vimu2g01539 | 485 | SUPERFAMILY | Retrovirus zinc finger-like domains | 424 | 458 | IPR036875 | GO:0003676|GO:0008270 | |
Vimu2g01539 | 485 | Pfam | DEK C terminal domain | 7 | 59 | IPR014876 | - | |
Vimu2g01539 | 485 | MobiDBLite | consensus disorder prediction | 454 | 471 | - | - | |
Vimu2g01539 | 485 | SUPERFAMILY | ssDNA-binding transcriptional regulator domain | 95 | 156 | IPR009044 | GO:0003677|GO:0006355 | |
Vimu2g01539 | 485 | ProSiteProfiles | Zinc finger CCHC-type profile. | 439 | 452 | IPR001878 | GO:0003676|GO:0008270 | |
Vimu2g01539 | 485 | MobiDBLite | consensus disorder prediction | 454 | 485 | - | - | |
Vimu2g01539 | 485 | Pfam | Transcriptional Coactivator p15 (PC4) | 96 | 146 | IPR003173 | GO:0003677|GO:0006355 | |
Vimu2g01539 | 485 | Pfam | gag-polypeptide of LTR copia-type | 259 | 388 | - | - | |
Vimu2g01539 | 485 | MobiDBLite | consensus disorder prediction | 405 | 427 | - | - | |
Vimu2g01539 | 485 | PANTHER | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR | 3 | 160 | IPR045125 | GO:0003713|GO:0060261 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu2g01539 | Vimu-Chr2 | 10715333 | 10718153 | Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | Coactivator p15 | Vimu2g01539 | Retrotran_gag_2 | 2e-12 | CL0523 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu2g01539 | - | - | var:108341934 | 866.685 |