Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01537 ATGAAGGTTGACGCGGGGTCAGGGCGCGTGGCGTGGAACGAGGAGGAGAAGGCCGTTGTTGGAGCTGTTCTGGGTGGTCTAGCTCTGGAGTTCTTAACGACAAACTCGGTGTCGAATGAGAGTGTTTTAATCGCGGTTGGGAGCGACGAGGGACTTCAGAACAAGCTCTCGGATCTGGTGGAGCGTCCCAACGACTCAAATTTCAGTTGGAACTACGCTATTTTCTGGCAGCTCTCGCAGTCGAAATCCGGTGATTGGGTTCTGGGTTGGGGAGACGGGTGCTGCAGGGAGCCCAACGAGGAAGAGGAGGGTGCGGTGAGAGGAAAGCTGAGGCTTCTTCGCGTGGACGAGGAGATGCAGCAGAGGATGAGGAAGGGGGTGCTGCAGAAGCTGCACACTACTTTTGGAGGATCGGATGAGGACAATTACGCCTTTGGCCTCGACCACGTGACCGACACGGAGATGTTCTTCCTTGCTTCCATGTACTTCTCTTTCCCCCGCGGGCATGGGGGCCCAGGTAAGTGCTTCGTTTCCGGGAAGCATTTGTGGCTGAAATCTGTGTCTGATTACTGCGTGCGGTCTTCCTTGGTTAAATCTGCCGGAATTCAGACCATCGTTATGATCCCTACTGATTTGGGAGTGGTGGAGCTGGGTTCCGTGAGAGTGTTAGCAGAGAGTTTTGAACTCGTGCAGGCCATTAAATCTGTGTTCTCCACGCAGTGTCCGCCCTACCCTGGGGTGAACGTGAGCACCAGTGCGAATGCCGTTTATACAGGTTTGGCAATTGGGGACGGTAGTAAGGTAGATGTTCCCAAGCTTTTTGCAAACTCAGCTGGCAATCGGACCCATTTCAGAGAGAAACTTGCTGTTAGAAAAATGGAGGATAACAGGCCTTGGGTAGGCCATGCCCTCCCCAATGGGAATAACCTTAACAACAATCCCAATGCAATGAATGGTCTTCATGTTCCAGGTTGGGCAGTGAATTCAGGTGTGAGACAGGCTGGTCCTGTTGAGATTTTTGCTTCCAGGGCATCCACCAGCAGTGTTGTAGCGGAGTTGCCTAATGGTGCTAGACAGGATTTTAGGCTTGGCAACGGCTATCAACCTCAAAGGCAGGTGCAAATGCAAATTGACTTTACCGGAGCAACTTCTAGGCCCTCTCATGTGAGACCGGTTGTTGGTGATTCAGAGCTTTCTGATGTTGAGGCCTCTTGCAAGGAGGAGCAGGCCAGTGTTTTGGATGAAAGGAAGCCCAGGAAACGGGGTAGGAAGCCTGCCAATGGAAGGGAAGAACCCCTGAATCATGTGGAAGCCGAGAGGCAGAGACGTGAGAAGCTCAACCAAAGGTTCTATGCATTGAGATCTGTAGTCCCTAATATCTCCAAAATGGACAAAGCTTCGTTGTTGGGCGATGCCATTGCCTACATCAATGAGCTTCAGGCGAAGGTCAAAATCATGGAGGCTGAAAGAGAGAGATTTGGAAGCACCTCGAAAGATGGATCAGTTTTGGATGCTTACTCAAGATCTGAAAATAAAAATCAAGAGAAAGAAGCTCCTGATGTGGATATTCAAGCAGCTCAAGATGAGGTAACTGTAAAGGTGAGTTGCCCTTTTGATACTCACCCTGTTTCCAAAGTAATTCAAACACTCAGCGAGGCACAAATCAGTGTTGTAGAATCAAAACTTGCTGCCGCAAATGACACTGTTCTCCACACATTTGTAATTAAGTCCCAAGGATCCGAACAACTTACAAAGGACAAGTTGATTGCTGTTTTTTCCCCACCAGAATCCAACCCATTGCATCCATTGTCATCAGTTGGATAA 1824 0.4978 MKVDAGSGRVAWNEEEKAVVGAVLGGLALEFLTTNSVSNESVLIAVGSDEGLQNKLSDLVERPNDSNFSWNYAIFWQLSQSKSGDWVLGWGDGCCREPNEEEEGAVRGKLRLLRVDEEMQQRMRKGVLQKLHTTFGGSDEDNYAFGLDHVTDTEMFFLASMYFSFPRGHGGPGKCFVSGKHLWLKSVSDYCVRSSLVKSAGIQTIVMIPTDLGVVELGSVRVLAESFELVQAIKSVFSTQCPPYPGVNVSTSANAVYTGLAIGDGSKVDVPKLFANSAGNRTHFREKLAVRKMEDNRPWVGHALPNGNNLNNNPNAMNGLHVPGWAVNSGVRQAGPVEIFASRASTSSVVAELPNGARQDFRLGNGYQPQRQVQMQIDFTGATSRPSHVRPVVGDSELSDVEASCKEEQASVLDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKVKIMEAERERFGSTSKDGSVLDAYSRSENKNQEKEAPDVDIQAAQDEVTVKVSCPFDTHPVSKVIQTLSEAQISVVESKLAAANDTVLHTFVIKSQGSEQLTKDKLIAVFSPPESNPLHPLSSVG 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01537 607 Pfam Helix-loop-helix DNA-binding domain 434 480 IPR011598 GO:0046983
Vimu2g01537 607 FunFam Transcription factor bHLH13 423 497 - -
Vimu2g01537 607 MobiDBLite consensus disorder prediction 400 441 - -
Vimu2g01537 607 SMART finulus 436 485 IPR011598 GO:0046983
Vimu2g01537 607 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 433 493 IPR036638 GO:0046983
Vimu2g01537 607 Gene3D - 423 495 IPR036638 GO:0046983
Vimu2g01537 607 MobiDBLite consensus disorder prediction 494 520 - -
Vimu2g01537 607 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 430 479 IPR011598 GO:0046983
Vimu2g01537 607 MobiDBLite consensus disorder prediction 381 441 - -
Vimu2g01537 607 Coils Coil 476 496 - -
Vimu2g01537 607 CDD bHLH_AtAIB_like 427 492 - -
Vimu2g01537 607 PANTHER MYC 39 590 IPR045084 GO:0003700|GO:0006355
Vimu2g01537 607 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 237 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01537 Vimu-Chr2 10698409 10702337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01537 8 607 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 49.051 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu2g01537 bHLH-MYC_N 4.9e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01537 - - gmx:100801502 937.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01537 2 10698409 10702337 Vimu9g00086 9 1059287 1061155 PCT