Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu2g01535 | ATGGACCATCAACCCCCACCCTGCCCCGATGACGACCTAACCGCCGCCAACACCACCACCCCGAGGTCCGGCACGCGCCACCCCGTCTACCGCGGCGTCCGCAAGCGCCGCTGGGGAAAATGGGTCTCCGAAATTCGGGAGCCGCGCAAGAAGAACCGCATATGGTTGGGGTCTTTTCCGGTGCCAGAGATGGCGGCGCGAGCGTACGACGTCGCCGCGTACTGCCTCAAGGGTCGGAAGGCGCAGCTCAACTTTCCCGATGAGGTGGACTCCCTGCCGCTTCCTTCGTCCCGCACGGCCAGGGACATTCAGGCCGCCGCCGCCCAGGCGGCGCGCATGATGAAAGCGGATGGCAGTGACGTGAAAAGCAGCATTGCCGATGATGACGGAGACAGCGGCGGCGACGATTTTTGGGGCGAGATTGAGTTGCCGGAGCTGATGGACGGCGAGTGCTGCTGGGGTTGCCCCGGAGGATCCTCGTGGACTACCTCCGGCGACATCGCCGATTGGACGGAGGAGGAGCTTTCACCGCAGCAACCGTCGTTCCTGGCGTGTCTATGA | 561 | 0.6471 | MDHQPPPCPDDDLTAANTTTPRSGTRHPVYRGVRKRRWGKWVSEIREPRKKNRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDEVDSLPLPSSRTARDIQAAAAQAARMMKADGSDVKSSIADDDGDSGGDDFWGEIELPELMDGECCWGCPGGSSWTTSGDIADWTEEELSPQQPSFLACL | 186 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu2g01535 | 186 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 15 | 146 | - | - | |
Vimu2g01535 | 186 | PRINTS | Ethylene responsive element binding protein signature | 30 | 41 | IPR001471 | GO:0003700|GO:0006355 | |
Vimu2g01535 | 186 | PRINTS | Ethylene responsive element binding protein signature | 68 | 88 | IPR001471 | GO:0003700|GO:0006355 | |
Vimu2g01535 | 186 | ProSiteProfiles | AP2/ERF domain profile. | 29 | 86 | IPR001471 | GO:0003700|GO:0006355 | |
Vimu2g01535 | 186 | Gene3D | AP2/ERF domain | 29 | 87 | IPR036955 | GO:0003700|GO:0006355 | |
Vimu2g01535 | 186 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Vimu2g01535 | 186 | MobiDBLite | consensus disorder prediction | 119 | 138 | - | - | |
Vimu2g01535 | 186 | Pfam | AP2 domain | 28 | 78 | IPR001471 | GO:0003700|GO:0006355 | |
Vimu2g01535 | 186 | FunFam | Ethylene-responsive transcription factor 2 | 28 | 87 | - | - | |
Vimu2g01535 | 186 | SMART | rav1_2 | 29 | 92 | IPR001471 | GO:0003700|GO:0006355 | |
Vimu2g01535 | 186 | CDD | AP2 | 30 | 87 | IPR001471 | GO:0003700|GO:0006355 | |
Vimu2g01535 | 186 | SUPERFAMILY | DNA-binding domain | 29 | 88 | IPR016177 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu2g01535 | Vimu-Chr2 | 10672312 | 10673041 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu2g01535 | 1 | 186 | AP2-EREBP Transcription Factor Family | AT1G01250 | 53.500 | 2.60e-54 | 169 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Vimu2g01535 | AP2 | 1.9e-13 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu2g01535 | K09286 | - | gmx:100819971 | 333.183 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu2g01535 | 2 | 10672312 | 10673041 | Vimu9g00083 | 9 | 1005853 | 1006407 | PCT |