Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01530 ATGGCACATCTGGAAGCTCCTGTCAGAACTGTGTCCAGTTCTCAGCCAGAAACAGGTCAATGGCTTATGTTTCGTGGGGATTTTGTGGACCTTGCTCTGGTTCTGGTTCAATTGTTGATGTGTTGTGTCTTCCTTACTGGGACTGTGTTTTGGAAGAAGAGTGTGGGAGATGGTGATCTGTACACGCAGCTATGGAAGCTATGTGCGGGGCCTTTGGTGGATGTTCCTTGCGAAGGGGAGAGAGTTTTCTACTTTCCGCAGGGTCACATGGAACAATTGCAAGCTTCGACTAATCAAGGACTGAACCAGGAGCTGAGCCAGCAAATTCCTCATTTCAATCTTCCGTCCAAGATTCTCTGTCGTGTTGTTCACATTCAGTTGTTGGCGGAACAAGAAACAGATGAAGTTTATGCTCGTATCACTTTGCTTCCGGAGTCAAATCAAGAAGAGCCAACGAGTCCAGACCCAAGTCCACCAGAGACCCAGAAACAGAGCTTTCACTCTTTTAGTAAAATATTAACTGCTTCTGATACTAGCACTCATGGAGGATTTTCAGTTCTTCGGAGGCATGCTACCGAGTGTCTGCCTCCATTGGACATGACCCAAAGTATCCCCACTCAGGAATTGGCAGCAAAGGATCTTCATGGGTTTGAGTGGAAGTTTAAGCATATATTCAGAGGTCAACCGAGGAGGCACCTGCTCACAACTGGCTGGAGTACATTTGTGACATCCAAGAGACTTGTTGCTGGAGATGCTTTTGTGTTTCTGAGGGGAGAGAATGGCGAACTGAGAGTTGGTGTTAGGCGTTTAGCACGACAGCAAAGTCCCATGCCTTCTTCTGTGATATCAAGCCAGAGTATGCATCTTGGAGTGCTTGCCACCGCCTCTCATGCATTTTTGACCAGTACCATGTTTGTGGTATATTACAAACCTAGGACTAGCCAGTTTATTATTGGTCTAAACAAATATCTGGAGGCAGTGAACAAGTTTTCAGTTGGCATGCGTTTCAAGATGAGATTTGAGGTGGAGGACTCACCTGAGAGAAGATTTTCTGGTACCATTGTTGGGGTTGGGGATGTATCTCCAGGATGGCGGAACTCTCAGTGGCGTTCGTTGAAGGTTCAATGGGATGAACCGGCAATAATTCCAAGGCCAGAGAGGGTTTCTTCGTGGGAGGTAGAGCCTTTCGTTGCTTCCACTGCTTTGAATGTCACTCAACCCGTAGTGAAGAGCAAAAGGTCCAGGCCTGAGGTTTCGTCTTCTGAAATTGGCCCCAACTCCCCTGGTGCGGCTTTGTGGTATCACGGAGCATCCTTATCTCATGACCCTACTGCATTGGGTGGCACTTCAGAGGTCCAAAGCAATGAAAGCCCAGTTATATGGTGTACAAGGATGAAAGAAATAAATGTGAATCCGATGAATGGTAACAAGAGCAGCTCGAACAGAGTCCGTGTGGAAGGAATGTGGCCATCTTCCCCACATTTGAGTGTCTCTTCGAACCTTTTTCCGGACCCCAAAAACAGCAAAGCTGTGACAGCACAATCAACTGTCTCCGGGTATGCCCCTGTTTCATCTAGGCCGAATGATGATTTGGCACATGATCCCGTGGAATGTGGTAAAAGAAGTGAGAATCCCATGGACTGTTGGGTGTTTGGAGTTAATTTGACTAACAATTTTACTAATGTTGCCCTTCCTGATAAAGAACTAGGATGTCCACCTATAATAATTCCTAGTGGTCCCAAAGATTCTATTCCTGTTGCTGCATGTGAAACTCAGCCTGGTCAGAATCACAATTATTCACTGTCCAATAAGGTGCAGAAGCAAATTATTTCTGATGGATCACCCAGTGAGAGACACGCCAAGCAGGCCACAGTACCATCCACCAGGACTCGGACCAAGAAGGTGCAAATGCAAGGTGTTGCTGTTGGTCGTGCTGTTGACCTCACTGTCCTAAAAGATTACGAGGCTCTCATAGACGAGCTTGAGAAAATTTTTGATATCAAGGGAGAGCTTCGAATGCAAACCAAATGGGCTATTACTTTCACTGATGATGAGAATGACATGATGCTCGCGGGTGATGATCCATGGCCTGAATTCTGTTCTATGGCGAAGAGGATTTTCATTTGTTCAAGGGAAGATGTGAAGAAGTTGAAAAGCAAGCATTCTGGTTTTTCATCAGAGGGTGAGGAGACTTTGTTGAGCCAAGATTCACAGAATAGGGAGGAAACTCAGCAAATCTCTTGCGATTTGACAGCTTAA 2259 0.4608 MAHLEAPVRTVSSSQPETGQWLMFRGDFVDLALVLVQLLMCCVFLTGTVFWKKSVGDGDLYTQLWKLCAGPLVDVPCEGERVFYFPQGHMEQLQASTNQGLNQELSQQIPHFNLPSKILCRVVHIQLLAEQETDEVYARITLLPESNQEEPTSPDPSPPETQKQSFHSFSKILTASDTSTHGGFSVLRRHATECLPPLDMTQSIPTQELAAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGENGELRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAFLTSTMFVVYYKPRTSQFIIGLNKYLEAVNKFSVGMRFKMRFEVEDSPERRFSGTIVGVGDVSPGWRNSQWRSLKVQWDEPAIIPRPERVSSWEVEPFVASTALNVTQPVVKSKRSRPEVSSSEIGPNSPGAALWYHGASLSHDPTALGGTSEVQSNESPVIWCTRMKEINVNPMNGNKSSSNRVRVEGMWPSSPHLSVSSNLFPDPKNSKAVTAQSTVSGYAPVSSRPNDDLAHDPVECGKRSENPMDCWVFGVNLTNNFTNVALPDKELGCPPIIIPSGPKDSIPVAACETQPGQNHNYSLSNKVQKQIISDGSPSERHAKQATVPSTRTRTKKVQMQGVAVGRAVDLTVLKDYEALIDELEKIFDIKGELRMQTKWAITFTDDENDMMLAGDDPWPEFCSMAKRIFICSREDVKKLKSKHSGFSSEGEETLLSQDSQNREETQQISCDLTA 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01530 752 CDD B3_DNA 167 269 IPR003340 GO:0003677
Vimu2g01530 752 FunFam Auxin response factor 329 400 - -
Vimu2g01530 752 FunFam Auxin response factor 167 271 - -
Vimu2g01530 752 Pfam Auxin response factor 295 373 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vimu2g01530 752 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 59 718 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vimu2g01530 752 MobiDBLite consensus disorder prediction 499 530 - -
Vimu2g01530 752 MobiDBLite consensus disorder prediction 726 752 - -
Vimu2g01530 752 ProSiteProfiles PB1 domain profile. 630 711 IPR000270 GO:0005515
Vimu2g01530 752 ProSiteProfiles B3 DNA-binding domain profile. 169 271 IPR003340 GO:0003677
Vimu2g01530 752 Pfam AUX/IAA family 617 666 IPR033389 -
Vimu2g01530 752 SUPERFAMILY CAD & PB1 domains 628 706 - -
Vimu2g01530 752 SUPERFAMILY DNA-binding pseudobarrel domain 160 298 IPR015300 -
Vimu2g01530 752 Gene3D - 329 401 - -
Vimu2g01530 752 Gene3D - 166 270 IPR015300 -
Vimu2g01530 752 SMART B3_2 169 271 IPR003340 GO:0003677
Vimu2g01530 752 MobiDBLite consensus disorder prediction 499 523 - -
Vimu2g01530 752 MobiDBLite consensus disorder prediction 719 752 - -
Vimu2g01530 752 Gene3D - 627 718 - -
Vimu2g01530 752 MobiDBLite consensus disorder prediction 145 165 - -
Vimu2g01530 752 Pfam B3 DNA binding domain 169 269 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01530 Vimu-Chr2 10626323 10631408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01530 56 717 B3 DNA Binding Superfamily AT4G23980 56.907 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vimu2g01530 B3 4e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01530 K14486 - gmx:100820503 1091.26