Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01524 ATGGCTTTCCATGCTGATGAGGCAAAGACGACTATGCAACATCAACCTTGCGCAGCTTGCAGGATGTTACGCCGAAGATGTGACAGTAAGTGCGAACTTGCTCTATATTTCCCAACCGGCGAGGTTGAGAATTTTGCCGTAGTGCATAGAGTGTTCGGTGCTAGAAACGTTGTCAAAAGGATTCAGACGGTTGAGGAAGCAAAGAGAGGTGATGCAGTTAAATCCATGGTGTACGAGGCCACAGCAAGGCTTAGAGATCCAGTTTATGGGAGTGCTGGAGTTATTTATGAGTTACAAAAGATGATCGAGGAACTTAAGGCACAGTTGGATTCGATAAAAACAAGGATGTCAGAGATGAGAGAAGAAAAGGAGCAGTTGTTGAGCATTGGTAACAACTACGATCCTTTATTTGGCATCAGTGGCACTATCTTTGATTCTGCTATGGCCTCAGATCCATTTGAATTTCCTGTGGAAGGTGGCTGGCTATGCAGCAATATCTCAACACCCTCCTAG 513 0.4503 MAFHADEAKTTMQHQPCAACRMLRRRCDSKCELALYFPTGEVENFAVVHRVFGARNVVKRIQTVEEAKRGDAVKSMVYEATARLRDPVYGSAGVIYELQKMIEELKAQLDSIKTRMSEMREEKEQLLSIGNNYDPLFGISGTIFDSAMASDPFEFPVEGGWLCSNISTPS 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01524 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 122 - -
Vimu2g01524 170 Pfam Lateral organ boundaries (LOB) domain 16 113 IPR004883 -
Vimu2g01524 170 Coils Coil 95 129 - -
Vimu2g01524 170 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01524 Vimu-Chr2 10587495 10588098 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01524 16 134 AS2 family AT1G07900 52.101 5.08e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu2g01524 LOB 1.3e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01524 - - vra:106754025 285.804