Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01523 ATGGGAAGAGCTCCTTGTTGCTCCAAAGTAGGGTTGCACAGAGGTCCATGGACTCCACGAGAAGATGCTTTGCTCACTAAGTATATTCAAGCTCATGGAGAAGGCCAGTGGAGATCACTGCCAAAAAGAGCTGGTCATAATATATTACTTTCTCTTCTTCTTCTTCTTCATCTTCCATCTCAATGTCTTCTAAGATGCGGGAAAAGTTGCAGACTGAGATGGATGAACTATCTGAGACCAGATATAAAGAGAGGAAACATAACTCCAGAAGAAGACGATCTCATAATTAGAATGCATTCACTTTTAGGAAATCGATGGTCCCTCATTGCTGGAAGGTTACCGGGACGAACAGATAATGAGATAAAGAATTACTGGAATACCCATCTTAGCAAGAAGCTGAGAAATCAAGGAACAGATCCTAAGACACACCACAAGTTAACCGTACCACCAGAGAAGAAGAAGGGCAAAAAGAAGAACAAGCAAAAGCATGAGAATAAGAAAGGGAGCTCCGAGAAAACCTTGGTTTATCTACCAAAAGCGGTGAGGGTGAAGGGTCTGTCATGTGTGCCTCGAACGGAGAGCACCTTCACCCTGGATTCGAATTCGGGTAGTGCATCGACGAGCCAGGAGAAAGTTCAAAGCCCAGAAGAAGTAGCAAGAGAGGTAAACATGGTTTGGGGTGTAGGCAACGAAGGAATTTTCTTTGGTGAAGACCACGACCTAGTCAACACCTCTTACGTAGAATGTCATTCCGATGATGTTCACACTGATCATGGTACGCTACAAAAGCTCTACGAAGAGTACTTGCAGCTCTTGAAGGATGAAGAGAAACCTGCGGATGAATTAGATTCTTTTGCCCAATCTTTATTGGTGTAG 876 0.4372 MGRAPCCSKVGLHRGPWTPREDALLTKYIQAHGEGQWRSLPKRAGHNILLSLLLLLHLPSQCLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLRNQGTDPKTHHKLTVPPEKKKGKKKNKQKHENKKGSSEKTLVYLPKAVRVKGLSCVPRTESTFTLDSNSGSASTSQEKVQSPEEVAREVNMVWGVGNEGIFFGEDHDLVNTSYVECHSDDVHTDHGTLQKLYEEYLQLLKDEEKPADELDSFAQSLLV 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01523 291 CDD SANT 16 78 IPR001005 -
Vimu2g01523 291 FunFam Transcription repressor MYB5 88 173 - -
Vimu2g01523 291 SUPERFAMILY Homeodomain-like 11 125 IPR009057 -
Vimu2g01523 291 ProSiteProfiles Myb-like domain profile. 9 78 IPR001005 -
Vimu2g01523 291 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Vimu2g01523 291 CDD SANT 88 129 IPR001005 -
Vimu2g01523 291 Gene3D - 14 83 - -
Vimu2g01523 291 MobiDBLite consensus disorder prediction 132 172 - -
Vimu2g01523 291 Gene3D - 88 173 - -
Vimu2g01523 291 Pfam Myb-like DNA-binding domain 84 129 IPR001005 -
Vimu2g01523 291 Pfam Myb-like DNA-binding domain 14 78 IPR001005 -
Vimu2g01523 291 SMART sant 13 80 IPR001005 -
Vimu2g01523 291 SMART sant 83 131 IPR001005 -
Vimu2g01523 291 MobiDBLite consensus disorder prediction 195 213 - -
Vimu2g01523 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 133 IPR017930 -
Vimu2g01523 291 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 210 - -
Vimu2g01523 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 78 IPR017930 -
Vimu2g01523 291 MobiDBLite consensus disorder prediction 195 216 - -
Vimu2g01523 291 MobiDBLite consensus disorder prediction 147 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01523 Vimu-Chr2 10579628 10581193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01523 4 158 MYB Transcription Factor Family AT3G13540 60.625 3.76e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu2g01523 Myb_DNA-binding 1.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01523 K09422 - gmx:778044 442.195