Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01511 ATGTCAGATATTGCGGAATATTCTCATTCATCGAATGCAGGCACGAGAAAGAAGAGGAGCATAAACAAAAAAAGGTTCAGCGATGGACAAGTTAAATCACTGGAATCCATGTTCCAGACAGACTCCAGACTGGAACCGGCAAAGAAATTGGAGTTGGCAAGAGAGCTTGGCTTGCAACCAAGACAAGTTGCCATATGGTTTCAGAACAAGAGAGCTCGATGGAAGCTAAAGCAGGTTCAGCGAGACTACACCACACTTCGAGCCAATTATAACACGTTGGATTCAAGGTTTGATGCTCTCAACAAGGAGTATCAATCAATGTTAACACAGTTGCAGGATCTGAAAAATCGACTACAGAAGCCCCTAGAACAAACTGAGAGTTGTAGTACGCGATACAAAGCAGCAAACAGCATGGAGAGTGAAGCGGGAAATGGAGAAACAGTCAAAAGAGAACAGGAGATAAAGCAGCCTTGCTCGACAGCAGGAAGATCAGAAGGCATTGGTCGTAGTGTTATCTCGGACTGCGACAGCAGCATTAAGGCAAAACAAGACTTTGGTGTGGAAGATGAAGCTTCTCTTCTGAGCTTTGTCGAGAACACTGATGGTTCTTTGACAACACCACAACATTGGGGTTTGTTGGAATCAGATGATATCATGGGCCAATTAACCGGCTGTGATTACCAATGGTGGGACTTCTGGTCCTGA 705 0.4468 MSDIAEYSHSSNAGTRKKRSINKKRFSDGQVKSLESMFQTDSRLEPAKKLELARELGLQPRQVAIWFQNKRARWKLKQVQRDYTTLRANYNTLDSRFDALNKEYQSMLTQLQDLKNRLQKPLEQTESCSTRYKAANSMESEAGNGETVKREQEIKQPCSTAGRSEGIGRSVISDCDSSIKAKQDFGVEDEASLLSFVENTDGSLTTPQHWGLLESDDIMGQLTGCDYQWWDFWS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01511 234 MobiDBLite consensus disorder prediction 1 15 - -
Vimu2g01511 234 SUPERFAMILY Homeodomain-like 7 78 IPR009057 -
Vimu2g01511 234 SMART HOX_1 15 81 IPR001356 GO:0003677
Vimu2g01511 234 FunFam Homeobox-leucine zipper protein ATHB-7 5 77 - -
Vimu2g01511 234 Coils Coil 69 117 - -
Vimu2g01511 234 ProSiteProfiles 'Homeobox' domain profile. 17 77 IPR001356 GO:0003677
Vimu2g01511 234 Pfam Homeodomain 23 75 IPR001356 GO:0003677
Vimu2g01511 234 CDD homeodomain 16 78 IPR001356 GO:0003677
Vimu2g01511 234 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 18 155 IPR045224 GO:0003700
Vimu2g01511 234 Pfam Homeobox associated leucine zipper 77 119 IPR003106 GO:0006355|GO:0043565
Vimu2g01511 234 MobiDBLite consensus disorder prediction 136 163 - -
Vimu2g01511 234 PRINTS Lambda-repressor HTH signature 57 73 IPR000047 GO:0003677
Vimu2g01511 234 PRINTS Lambda-repressor HTH signature 48 57 IPR000047 GO:0003677
Vimu2g01511 234 ProSitePatterns 'Homeobox' domain signature. 52 75 IPR017970 GO:0000981|GO:0006355
Vimu2g01511 234 Gene3D - 11 85 - -
Vimu2g01511 234 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01511 Vimu-Chr2 10467692 10468644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01511 25 234 Homeobox Transcription Factor Family AT3G61890 43.981 7.32e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu2g01511 Homeodomain 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01511 K09338 - gmx:100806279 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01511 2 10467692 10468644 Vimu9g00047 9 583883 584858 PCT