Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01500 ATGGAAGACTTGTACCATGCTTGTTTTAGTACAGTGGATGAAAATTCTAGTTCATCCAATGATATTTTCTGGGGCAGTGAGGAACAGAATGAAATAAAGAAGTTACACTTTTCTGTAGCAGAAGATCATGGAGTTTATGGGGGAGTAGACTCCTCCTTTTACTCTAATTTCGAGTTTTCCCCAGATTATCCATCAGGATACCTTATATCCCCTAATCAAGAAAAGTATCACCAGCAACAACCATACCATGATTATGGCCATTTGGATGATAACCTTCAGTTTGACATGGTGGCTCCACCACTCCAATTTGATGCACAATATCCAACCAGTGGTACAACAGAGGATAAGCCACACTCAACTATCCCTTTAGCCTCACTTGAGATCTTGAAGAACTATGGCAAGGGCTTCAAGAGGTTTTCCTATGAAGGCAAATCCCTGCAGCCAGTGGTTGATTCTGTGGCCACAGATGAATTTGGTTTTAGAAAACTCTCAACTGAAGATATCATGAGGATCGCAGGAACAAGGTTCATCGAATCATCATCTTCAGAGTCAGAACCTTTGACTTTCTTGGAAAATCACCCTTATGGGTTTTCCTTCTCTGGATTCTCTGATGAGGAGAAAGAGGATGTGGCACTGTCTGAGTCCCTCTTGGCTTGTGCTGAGAAAGTTGGTCATCAACAATTTGAACGTGGAAGGAAGTTGCTAAGTCACTGCCAATCATTGTCAAGCAAAACTGGGAGCCCCGTTAAGAGAATTGTTCATTACTTTGCTGAAGCACTTCTCCACAGGATAGATAGAGAAACTGGAAGAGGTTCATCCAAGGATTTGCATAAAGGTCAGTCATTTGATCCTGAAGAGGGAGCCAAGGAACTAAACCCCGCTATTGTTGCATTTTATGAAGCGCTTCCCTTTTGTCAAATTTCAGTGTTCACTGCAGTTCAAGCTATAATAGAAGATGTAGCTGAAGCAAAGAAGATTCATGTTATTGATCTTGAAATCAGAAAGGGGGGCCAATGGGCTATCCTAATGCAAGCCCTTGAGTCAAGGCATCAATGTCCAGTTGAGCTTCTAAAGATTACCGCTATTGAAAGTGGAACCACTAGACACATGGTTGAGGACACTGGTAAGAGATTGAAGGATTTTGCTCAAGGTTTGAACATACCCTTCTCTTTCAACATTGTTATGGTACCAGACCTATTACATCTTAGAGAAGATCTTTTTGAGATCGATCCTGAGGAAGCAATTGCTGTTTATTCTCAGTTTGCACTCAGAACCAAGATTCAACAATCAGACCAGCTTGAAATCATCATGAGAGTGATTAGAACCTTGAATCCTAATGTGATGGTGGTAGCTGAAATTGAGGCAAATCACAACTCCACATCTTTTGTAAATCGTTTCATTGAGGCTCTTTTCTTCTTCAGTGCATTCTTTGACTGTCTTGAGGCTTGCATGAAGGGGAATGATAAGAACCGAATGATTTTAGAGTCACTATACTTGAGTCATGGAATCAAAAACATTGTGGCCACAGAAGGAGCAGAAAGAAAGACTAGGCATGTGAAGATTGATGTTTGGAGGGCCTTCTTCTCCCGCTTTGGAATGGTGGAGAAAGAACTGAGCACTTTGTCTTTGTACCAAGCAGATTTGGTGAGAAAAAGATTTCATTGTGGAAGTTCTTGCACGTTTGATAAGAATGGGCAGTGCCTTCTTGTTGGGTGGAAAGGAACACCGATTCATTCTGTTTCAGTCTGGAAATTCATTTGA 1761 0.4134 MEDLYHACFSTVDENSSSSNDIFWGSEEQNEIKKLHFSVAEDHGVYGGVDSSFYSNFEFSPDYPSGYLISPNQEKYHQQQPYHDYGHLDDNLQFDMVAPPLQFDAQYPTSGTTEDKPHSTIPLASLEILKNYGKGFKRFSYEGKSLQPVVDSVATDEFGFRKLSTEDIMRIAGTRFIESSSSESEPLTFLENHPYGFSFSGFSDEEKEDVALSESLLACAEKVGHQQFERGRKLLSHCQSLSSKTGSPVKRIVHYFAEALLHRIDRETGRGSSKDLHKGQSFDPEEGAKELNPAIVAFYEALPFCQISVFTAVQAIIEDVAEAKKIHVIDLEIRKGGQWAILMQALESRHQCPVELLKITAIESGTTRHMVEDTGKRLKDFAQGLNIPFSFNIVMVPDLLHLREDLFEIDPEEAIAVYSQFALRTKIQQSDQLEIIMRVIRTLNPNVMVVAEIEANHNSTSFVNRFIEALFFFSAFFDCLEACMKGNDKNRMILESLYLSHGIKNIVATEGAERKTRHVKIDVWRAFFSRFGMVEKELSTLSLYQADLVRKRFHCGSSCTFDKNGQCLLVGWKGTPIHSVSVWKFI 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01500 586 ProSiteProfiles GRAS family profile. 203 584 IPR005202 -
Vimu2g01500 586 Pfam GRAS domain family 213 584 IPR005202 -
Vimu2g01500 586 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 182 577 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01500 Vimu-Chr2 10365958 10368461 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01500 204 585 GRAS Transcription Factor Family AT3G03450 31.429 1.69e-58 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu2g01500 GRAS 2e-94 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01500 - - gmx:100798926 864.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01500 2 10365958 10368461 Vimu2g01500 2 10365958 10368461 ECH