Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01496 ATGAAACTCAACGTCAACTTCATCACCCTCTTATCCATAACCCTTGCCCTATGCTTTGCAATATGCAACGCGCATGACTCACCCAGCGTCGAAGAGCCTCAGTCCGAACCGCCACCGACTGACTCCGATTCGGCGGATCCGGCATCGGAAGAACCGTTAGTGGACCCGACATCGGCTAACCCGACATTCATGGACCAGTCATTGGCTGACCCACCAACAGATGACACGGCATCGGCGGACTCGCCATCTGAGGAACCAGTGACGGAACCCTCCGTGGACCCAACAGATAGCCCTGCAATGAAGGACCCGGAGGAACTGTATGGGGACCTGAAATCTGATACCACGGAATCGGCGGACGCGCCATCGGAGGACACGTCATTCGCGGACGCGCCAACGGCGGAGTCGCCATTCTCGAACACCTTCGAGGAAGGCTTCTTTGGTGGGGGTGGCGGCGTGCAACTCCGCAAAGCGTTTACCTCGTTCTTAAGCGAAATCCGGGTGGGGTCGTTGCGCGGGAGCAAGACGATTACGATGCTCAACCGCCACGACCGTGACTCTGTGAAGGAAATCTGCTCCCGCACGGACTACCCCGACGACTGCCTCTCCACCGTGGTGCCCTTCCTGGGCAACAACTTCGATCTCATGAGCGTCCTGGAAGCCGCCATCAAAGCCTGCTCCTTCCAGACCAACTTCACCATCTCCATTGTCGAGAAACACATGAAATCCTCATCGGAGATGGCCACCGCCCTCACTAACTGCAAGGAGCAGTACACCAACGCCTTCCAGAGCCTGCAGCAGGCCTTGAATGCCCTCAGCTCTCACGACCTCGCCACCGTGACCGTCATGCTGAGCTCCGTGATGGCGGATGTGTCCACCTGCGAGAGCGGCTTCGAGGACCTCAAGTTGGCTAAGGGTCGTGCTGAAGGCATGGTCAGCATAACGGTTAGCAACTGTCTCTCCATTGCTTCCATGATTCCCTCCTAG 984 0.5762 MKLNVNFITLLSITLALCFAICNAHDSPSVEEPQSEPPPTDSDSADPASEEPLVDPTSANPTFMDQSLADPPTDDTASADSPSEEPVTEPSVDPTDSPAMKDPEELYGDLKSDTTESADAPSEDTSFADAPTAESPFSNTFEEGFFGGGGGVQLRKAFTSFLSEIRVGSLRGSKTITMLNRHDRDSVKEICSRTDYPDDCLSTVVPFLGNNFDLMSVLEAAIKACSFQTNFTISIVEKHMKSSSEMATALTNCKEQYTNAFQSLQQALNALSSHDLATVTVMLSSVMADVSTCESGFEDLKLAKGRAEGMVSITVSNCLSIASMIPS 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01496 327 Coils Coil 254 274 - -
Vimu2g01496 327 SMART PMEI_2 182 321 IPR006501 GO:0004857
Vimu2g01496 327 MobiDBLite consensus disorder prediction 27 144 - -
Vimu2g01496 327 CDD PMEI-like_2 185 325 - -
Vimu2g01496 327 PANTHER PECTINESTERASE INHIBITOR-LIKE 174 317 - -
Vimu2g01496 327 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 185 326 IPR035513 -
Vimu2g01496 327 MobiDBLite consensus disorder prediction 55 90 - -
Vimu2g01496 327 NCBIfam pectinesterase inhibitor domain 180 323 IPR006501 GO:0004857
Vimu2g01496 327 Gene3D Invertase/pectin methylesterase inhibitor family protein 183 326 IPR035513 -
Vimu2g01496 327 Pfam Plant invertase/pectin methylesterase inhibitor 186 321 IPR006501 GO:0004857
Vimu2g01496 327 MobiDBLite consensus disorder prediction 98 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01496 Vimu-Chr2 10285577 10286833 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01496 179 298 Carbohydrate Esterase AT3G05610 27.273 5.98e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01496 - - vra:111241102 489.189