Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01491 ATGATTTCCATTCCCACTTCCTCACTTGCTTCATTTAGCCAAAGAGAAGAAATGGTTGACCGTACAAGGAGCAAGATTCTTGTAAGAGAATATAACGAAGATAAAGATGTTAAAATGGTGAGAAAACTAGAGAGGAACTCTGAGATTGGAGCTAAAAAGGTGGTCTCCATTTTTACCAACATGATGGGTGACCCTTTATCTAGGATTAGGTTTTTCCCTCTTCGTGTAATGCTGGTAGCTGAGCTTCTCGAGAGCAGGGAACTTGTTGGAGTTGTTAGAGGAGTCATTAAGAATGTAGGGACTCTTTCTGGATCACTCTTGAAGATGGGTTACATCCTAGGCCTCAGAGTCTCTCCTTCTTACAGGAGAAAGGGGGTTGCACTAAGACTTATCGCTGCAGTTGAAGAATGGATGGTGAGAAATGGAGCTGAGCATGCATTCCTAGCCACTGAAAAGGATAATGATGCTTCTAAAAACCTATTCACAGTCAAATGCAATTATGTGAACCTTAGCTCACTTGTCGTATTTGTCCAACCAATTAGTTCCATCACAAAGCATATTTCCAGGGATATAAAAATAGAGAAAGTGGACATAGATCTAGCAATTTCGTTATACAGAAGAACCTTGAAAAGAAAAGATTTGTATCCACTAGATATGGACGTTATTCTGAAGGAGAAACTGAGCATAGGCACGTGGGTAAGTTATTATAAGAGGGAGGGCTGGCTGAATTTGCGAAGCAAGGTAGATGATGAAGAAGATCTCATTAGCAGTGAAACTTCAAACTCATGGGTAATTTTTAGTATTTGGAACACTTGTGAAGCTTACAAGCTTCAAGTTAGAAGGTCTCAACTAGTAAGGTTTCTTCTTACAACCTTAAATCAGGCAAGAGAGAGAGTTTTCCCTTGTCTAAAAATGTCGGTGAGTAACTCACTTTGTAGATCCTTTGGTTTTCTGTTTATTTATGGAATCTATGGACAGGGAGAGAACCTTGGAGAGCTCATGGAATCCATGTGGAGATTCACATCAAGAGTGGGAGAAGGAATGAGGGACTGTAAGGTGTTTATAACTGAGTTAGGGTTTGGTGATCCACTTGCCAACCATGTTCCTCAAACAGATTCCATCTCATGTATCGATGATCTTTGGTACACAAAGAGACTTTCAACCCACGTTGATGAAAACACTGATGAAATATTGATGAGACAAGTGGGAAATGTGTTTGTTGACCCTAGAGATTTTTAG 1239 0.3995 MISIPTSSLASFSQREEMVDRTRSKILVREYNEDKDVKMVRKLERNSEIGAKKVVSIFTNMMGDPLSRIRFFPLRVMLVAELLESRELVGVVRGVIKNVGTLSGSLLKMGYILGLRVSPSYRRKGVALRLIAAVEEWMVRNGAEHAFLATEKDNDASKNLFTVKCNYVNLSSLVVFVQPISSITKHISRDIKIEKVDIDLAISLYRRTLKRKDLYPLDMDVILKEKLSIGTWVSYYKREGWLNLRSKVDDEEDLISSETSNSWVIFSIWNTCEAYKLQVRRSQLVRFLLTTLNQARERVFPCLKMSVSNSLCRSFGFLFIYGIYGQGENLGELMESMWRFTSRVGEGMRDCKVFITELGFGDPLANHVPQTDSISCIDDLWYTKRLSTHVDENTDEILMRQVGNVFVDPRDF 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01491 412 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 22 161 IPR016181 -
Vimu2g01491 412 CDD NAT_SF 77 148 - -
Vimu2g01491 412 Gene3D - 27 180 - -
Vimu2g01491 412 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 26 228 IPR000182 GO:0016747
Vimu2g01491 412 Pfam Acetyltransferase (GNAT) family 80 166 IPR000182 GO:0016747
Vimu2g01491 412 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 23 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01491 Vimu-Chr2 10247047 10249261 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vimu2g01491 Acetyltransf_1 5.8e-14 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01491 - - vra:106754018 793.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01491 2 10247047 10249261 Vimu2g01491 2 10247047 10249261 ECH
Vimu7g01718 7 15847983 15849739 Vimu2g01491 2 10247047 10249261 PCT