Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01482 ATGGCTTCAGCAAGCGGAGCAGAGAACTCGTCGGTTCCGCCGCAGCCACAAATTCACGATTCGCGAGCGAAGCCGAGCCACCACAACATCGACTCCATGAGCAAAGCCATCGCGCAGTACACGGAGGACGCGCGGCTGCACGCGGTGTTCGAGCAGTCCGGCGAGTCTGGGAGGTCATTCGATTACTCCCAATCGGTTCGCCTCACGTCGGAATCGGTTCCGGAGCAGCAGATAACGGCGTATCTACTCAAAATCCAGCGCGGCGGCTTCATCCAGCCGTTTGGCTGCATGATCGCGGTCGACGAGCCCTCCTTCCGAATCCTGGGATACTCAGAGAACGCGCGCGACATGCTCGGCATTACGCCGCAGTCCGTTCCCTCTATCGACGACAAGCTCGAGGCCTTCGCGCTAGGCGCGGACGTCCGCGCTCTATTCACTCACTCCAGCGCCCTTCTTCTCGAGAAGGCCTTCGCCGCGCGTGAAATTAGCCTCATGAACCCTATCTGGATCCATTCCCGAACCTCCGGTAAGCCTTTTTATGGCATCCTTCACCGGATTGACGTCGGAATCGTCATCGATTTGGAGCCCGCGCGCACGGAGGACCCAGCGCTTTCTATCGCCGGTGCCGTTCAGTCGCAGAAGCTCGCCGTGCGCGCGATTTCGCAGTTGCAGTCTCTCCCCGGTGGTGATGTTAAGCTTCTGTGTGATACTGTTGTTGAGAGTGTTAGGGAATTGACAAGGTACGATAGGGTTATGGTTTATAAATTTCACGAGGATGAGCATGGGGAGGTTGTTGCCGAGAGTAAGAGGCATGATTTGGAGCCTTACATTGGTTTGCATTATCCCGCCACTGATATTCCTCAGGCTTCTAGGTTTTTGTTTAAGCAGAATAGGGTTAGGATGATTGTGGATTGTCATGCTTCTGCTGTGAGGGTGGTGCAAGATGAGGCTCTTATGCAGCCTCTCTGTTTGGTTGGGTCAACGCTCAGGGCCCCCCATGGTTGTCATGCGCAGTACATGGCTAACATGGGGTCTATTGCGTCTTTGGTCATGGCTGTTATTATTAATGGAAATGACGAGGAAGGTGTTGGTGGCCGGAGTCCGATGAGGCTTTGGGGGCTTGTTGTTTGCCATCACACTTCTGCTAGGTGTATTCCCTTTCCCTTGAGGTATGCTTGTGAGTTTCTCATGCAGGCCTTTGGGCTGCAGTTAAACATGGAGCTTCAGTTGGCCGCGCAATCGTTGGAGAAACGGGTTTTGAGGACGCAGACTCTGTTGTGCGATATGCTTCTTAGGGACTCGCCTACTGGCATTGTTACCCAGAGTCCCAGTATTATGGACTTGGTGAAGTGTGATGGGGCTGCTCTTTACTACCAAGGGAATTATTATCCGTTAGGTGTGACTCCAACTGAGGCTCAGATAAGGGATATTATTGAGTGGTTGTTGGCCTTCCACGGAGATTCGACTGGTTTAAGTACTGATAGTCTTGCTGATGCTGGATATCCTGGTGCTGCCTTGCTCGGGGATGCGGTTTGTGGGATGGCAGTTGCTTATATCACGGAGAAGGATTTTCTTTTCTGGTTCAGGTCGCACACGGGAAAAGAGATCAAGTGGGGTGGTGCAAAGCATCATCCCGAGGACAAGGATGACGGGCAGAGAATGCATCCTCGTTCTTCTTTCAAGGCATTTTTAGAAGTGGTGAAAAGCCGCAGCTTGCCATGGGAGAATGCGGAAATGGATGCAATTCACTCGTTGCAGCTTATTTTACGTGACTCGTTTAGAGATACTGAGCATAGCAATTCTAAGGCTGTTGTGGATCCCCGTGTGGCAGAACTAGAGTTGCAAGGGGTTGATGAACTAAGTTCTGTGGCGAGAGAGATGGTTAGATTGATAGAAACAGCCACCGCTCCTATATTTGCGGTTGATATTGATGGCCACATAAATGGTTGGAATGCAAAGGTTTCAGAATTGACAGGACTTGCTGTTGAGGAGGCTATGGGGAAGTCCTTGGTTCATGATCTTGTGTTTAAGGAGTCTGAAGAAACTGTGGGCAAGCTTCTTTCTCGTGCTTTAAAAGGTGCTGTTTCTAATACTCTACCTTTCTGGTCCATTTATTGGGTATGTTAG 2127 0.5125 MASASGAENSSVPPQPQIHDSRAKPSHHNIDSMSKAIAQYTEDARLHAVFEQSGESGRSFDYSQSVRLTSESVPEQQITAYLLKIQRGGFIQPFGCMIAVDEPSFRILGYSENARDMLGITPQSVPSIDDKLEAFALGADVRALFTHSSALLLEKAFAAREISLMNPIWIHSRTSGKPFYGILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKLLCDTVVESVRELTRYDRVMVYKFHEDEHGEVVAESKRHDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASAVRVVQDEALMQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDEEGVGGRSPMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAAQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGNYYPLGVTPTEAQIRDIIEWLLAFHGDSTGLSTDSLADAGYPGAALLGDAVCGMAVAYITEKDFLFWFRSHTGKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDTEHSNSKAVVDPRVAELELQGVDELSSVAREMVRLIETATAPIFAVDIDGHINGWNAKVSELTGLAVEEAMGKSLVHDLVFKESEETVGKLLSRALKGAVSNTLPFWSIYWVC 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01482 708 ProSiteProfiles PAS repeat profile. 623 694 IPR000014 -
Vimu2g01482 708 SUPERFAMILY GAF domain-like 416 593 - -
Vimu2g01482 708 Gene3D - 211 569 IPR029016 -
Vimu2g01482 708 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 230 398 IPR016132 -
Vimu2g01482 708 PANTHER OS08G0260000 PROTEIN 75 681 - -
Vimu2g01482 708 SUPERFAMILY GAF domain-like 210 405 - -
Vimu2g01482 708 Gene3D - 413 586 IPR043150 -
Vimu2g01482 708 MobiDBLite consensus disorder prediction 1 29 - -
Vimu2g01482 708 Pfam Phytochrome region 421 595 IPR013515 GO:0006355|GO:0009584
Vimu2g01482 708 FunFam Phytochrome 413 543 - -
Vimu2g01482 708 Pfam GAF domain 231 408 IPR003018 GO:0005515
Vimu2g01482 708 ProSitePatterns Phytochrome chromophore attachment site signature. 330 339 IPR013516 -
Vimu2g01482 708 SUPERFAMILY PYP-like sensor domain (PAS domain) 629 696 IPR035965 -
Vimu2g01482 708 Gene3D PAS domain 84 333 - -
Vimu2g01482 708 SMART pas_2 625 692 IPR000014 -
Vimu2g01482 708 SMART pas_2 84 152 IPR000014 -
Vimu2g01482 708 Pfam PAS fold 626 693 IPR013767 GO:0006355
Vimu2g01482 708 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 198 IPR035965 -
Vimu2g01482 708 CDD PAS 634 702 IPR000014 -
Vimu2g01482 708 MobiDBLite consensus disorder prediction 1 17 - -
Vimu2g01482 708 PRINTS Phytochrome signature 556 574 IPR001294 GO:0006355|GO:0009584
Vimu2g01482 708 PRINTS Phytochrome signature 330 351 IPR001294 GO:0006355|GO:0009584
Vimu2g01482 708 PRINTS Phytochrome signature 438 458 IPR001294 GO:0006355|GO:0009584
Vimu2g01482 708 PRINTS Phytochrome signature 645 660 IPR001294 GO:0006355|GO:0009584
Vimu2g01482 708 PRINTS Phytochrome signature 523 542 IPR001294 GO:0006355|GO:0009584
Vimu2g01482 708 PRINTS Phytochrome signature 245 264 IPR001294 GO:0006355|GO:0009584
Vimu2g01482 708 PRINTS Phytochrome signature 145 167 IPR001294 GO:0006355|GO:0009584
Vimu2g01482 708 PRINTS Phytochrome signature 626 642 IPR001294 GO:0006355|GO:0009584
Vimu2g01482 708 SMART gaf_1 230 418 IPR003018 GO:0005515
Vimu2g01482 708 Gene3D PAS domain 621 703 - -
Vimu2g01482 708 Pfam PAS fold 80 197 IPR013654 GO:0006355
Vimu2g01482 708 NCBIfam PAS domain S-box protein 630 693 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01482 Vimu-Chr2 10177505 10179631 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01482 15 693 Histidine Kinase Gene Family AT2G18790 79.506 0.0 1139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01482 K12121 - gmx:100799831 1294.26