Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01481 ATGAGTCCTGAACTTCAACAGGCTCTGAAGGCACAGAGACAACAAGAGAAAACTTCCTTTGCTAGGATGAAAGAGTTAGCTTATATTAGTCAAGGAGTGAAAAATCCTTTAAGTGGCATACGCTTTACGAACTCTCTTTTGGAGGCTACAGGCTTGACCGATGAGCAAAAGCAGTTTCTTGAGACCAGTGCTGCCTGTGAGAAGCAAATGTTCAAGATAATACGCGACATTGATCTTGAAAGCATCGATGATGGAATGGTATGTCCTGGTGAAGGTCTTCCACCTGAACTGATTCAGGACATGTTCAATAACAGTCGGTGGGTGAGTCAAGAAGGTTTAGGGTTGAGCATGAGCAGGAAGATTCTAAAGGTACTGAACGGAGAAGTCCAGTATATCAGGGAAGCAGAACGGTGCTACTTTTTTATTCTTCTTGAACTCCCTGTGACGCGGAAAAACTCTAAAAAGGCTTAA 471 0.431 MSPELQQALKAQRQQEKTSFARMKELAYISQGVKNPLSGIRFTNSLLEATGLTDEQKQFLETSAACEKQMFKIIRDIDLESIDDGMVCPGEGLPPELIQDMFNNSRWVSQEGLGLSMSRKILKVLNGEVQYIREAERCYFFILLELPVTRKNSKKA 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01481 156 Gene3D - 2 83 - -
Vimu2g01481 156 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 89 144 IPR036890 -
Vimu2g01481 156 Pfam His Kinase A (phospho-acceptor) domain 25 85 IPR003661 GO:0000155|GO:0007165
Vimu2g01481 156 FunFam Phytochrome 2 83 - -
Vimu2g01481 156 CDD HisKA 21 77 IPR003661 GO:0000155|GO:0007165
Vimu2g01481 156 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 10 77 IPR036097 GO:0000155|GO:0007165
Vimu2g01481 156 SMART HisKA_10 21 85 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01481 Vimu-Chr2 10173542 10176869 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01481 2 85 Histidine Kinase Gene Family AT2G18790 65.476 3.21e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01481 K12121 - gmx:100799831 150.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01481 2 10173542 10176869 Vimu2g01481 2 10173542 10176869 ECH