Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01479 ATGTGTTCTTCTTGTTTCTTAAACCCTGAATGTGAAGTTTACAAAGCCTCAGAGTCTTTTTGTAGCATTCCCAGAGTAAGAATTGCTGAAATGGGAACCCCAGAAGAAGAAGATGAAGAAAAGCTTCTCAGAAAGATAGAACGGCTAGAAGCGGGTCACGCACACCTCAAGCAAGAAATGTCCAATTTCCAGCTCCTCCAAAACCACAGGTCTCATTCGAGGTTTGGTGCTGCTACGTCTAACCAACCCTCTTCTTCTTCTCTGCATCAAAATGGAAACAAGTATCTCAATATCTTGCAGTCAATGGGCCACTCTGTTCATGTTTTGGATCTTCAATGTCGCATCATGTACTGGAACCCTAGTGCTGAGAATCTGTATGGTTATGCAGCAGAAGAGGTTCTTGGGCGGGATGGGATTGAGATGCTTGTGGATCCTAGGGATTTTGGTTTGGCCAATGATTTGTTCAAGCATGTCAAAATGGGAGAGAGTTGGAGAGGGCAGTTCCCTGTTAAGAATAAGAAAGGCGATAGGTTCTATGCTGTGTCAACCAATACACCTTTCTATGATGAAGATGGAAGCTTGGTTGGGGTTATTTGTGTCTCCTGTGATTCACGGCCCTTTCTTGAATCCAGAATTCCCTTTCTAGGAGCAGAGAGTGCAGAACCTGTATCGAGTTCCAATGGTCGTAGGAGTAGCATTTCAGATAAACTTGGCCTTGACTCTCAGCAGCCACTTCAAGTTGCTCTGGCTTCGAAAATTTCAAATTTGGCTTCAAAGGTGAGTAACAAAGTTAAGTCTAGAATGAGGACAGGAGAATTTAGTGTCAATCGTGAAGGTGGGAGCGGAGAAAGTCGTCATTCTGAGCATAGTTTGTCGGACTCTGCTGTTTCTGACCAGAGAGAAGATGGTAATTCCAGTGGAGCTAGCACTCCCAGAGGAGATGTGCTAAAATCTCCTTTTGGTTTATTTTCTCATGCTGAAGAGAAATCCCAAGGGAAAACCATGAGGGACTCCAATGATCAGAGTGAAGGAAAACCTATTCACAAGATCATAACTTCTAAGGCTGAAACATGGATCCAAAAGAAAACATTGTCATGGCCTTGGAAGGCAAACGATCAGGAAGGATCTGAGGCAAGGAATGTTCAAGCTGCTTCACCTTGGTCGCAGGCTGACCAAGAGAATGAGTTGACTAATCAGAAGAATCTGTCTTCTGGGTTGAAGCCAGAAAGCCAGGCAGGCGAAAGCAATGGACCTGTTAATAATGAGGCTTCAGGATCCTGGTCCTCTTTTGTTAATGTTAACAGCACAAGTAGTACCAGCAGCTGCGGGAGTGGTAGTAGTTCTGCTCCCAATAATAAAGTGGATGTTGACTCCGATTCCTTGGATTATGAAATTTTGTGGGAGGACTTGACAGTTGGAGAACAAATTGGGCAAGGTTCTTGTGGAACTGTTTATCATGCTCTGTGGTATGGATCGGATGTTGCTGTCAAGGTTTTCTCAAAGCAAGAATATTCAGATGATTTGCTACTGTCCTTCAGACAAGAGGTGTCTGTCATGAAAAGACTTCGCCATCCAAATATTATTCTATTTATGGGGGCTGTGACTTCACCTCAACATTTATGCATCGTGACAGAGTTTCTCCCACGGGGAAGCTTATTTCGTTTGCTTCAGAGAAACACATCCAAACTAGAGCGGAGACGGAGAGTTCATATGGCCGTAGATATTGCACGAGGTGTAAATTATCTTCATCATTGCAACCCCCCCATCATCCATCGAGATTTGAAGTCTTCAAATATTCTAGTTGATAAGAATTGGACTGTGAAGGTTGGTGATTTTGGGCTTTCCCGTCTTAAACATGAAACATATCTCACTACCAAGACAGGGAAAGGAACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAACTGTCTGATGAGAAGTCTGATGTTTACAGCTTTGGGGTGATATTGTGGGAACTCACAACTGAAAAGATTCCTTGGGATACTCTCAACCCAATGCAGGTTATTGGAGCTGTAGGGTTCATGAACCATCGACTAGAAATTCCAGAAGATGTTGATCCACAGTGGGCTTCTATAATTGAGAGCTGCTGGCACAGTGATCCAGCTTGCCGACCAACATTCCAGGAACTGGTGGAAAGACTTAGAGAACTGCAGAGACAGTATGCAATTCAATTCCAGGCAGCTCGATCTGCCGAGGAAGGCACTCAAAAGGAGTTCTCTAGCAAATAG 2253 0.4399 MCSSCFLNPECEVYKASESFCSIPRVRIAEMGTPEEEDEEKLLRKIERLEAGHAHLKQEMSNFQLLQNHRSHSRFGAATSNQPSSSSLHQNGNKYLNILQSMGHSVHVLDLQCRIMYWNPSAENLYGYAAEEVLGRDGIEMLVDPRDFGLANDLFKHVKMGESWRGQFPVKNKKGDRFYAVSTNTPFYDEDGSLVGVICVSCDSRPFLESRIPFLGAESAEPVSSSNGRRSSISDKLGLDSQQPLQVALASKISNLASKVSNKVKSRMRTGEFSVNREGGSGESRHSEHSLSDSAVSDQREDGNSSGASTPRGDVLKSPFGLFSHAEEKSQGKTMRDSNDQSEGKPIHKIITSKAETWIQKKTLSWPWKANDQEGSEARNVQAASPWSQADQENELTNQKNLSSGLKPESQAGESNGPVNNEASGSWSSFVNVNSTSSTSSCGSGSSSAPNNKVDVDSDSLDYEILWEDLTVGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDLLLSFRQEVSVMKRLRHPNIILFMGAVTSPQHLCIVTEFLPRGSLFRLLQRNTSKLERRRRVHMAVDIARGVNYLHHCNPPIIHRDLKSSNILVDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNELSDEKSDVYSFGVILWELTTEKIPWDTLNPMQVIGAVGFMNHRLEIPEDVDPQWASIIESCWHSDPACRPTFQELVERLRELQRQYAIQFQAARSAEEGTQKEFSSK 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01479 750 MobiDBLite consensus disorder prediction 279 296 - -
Vimu2g01479 750 ProSitePatterns Serine/Threonine protein kinases active-site signature. 589 601 IPR008271 GO:0004672|GO:0006468
Vimu2g01479 750 MobiDBLite consensus disorder prediction 220 238 - -
Vimu2g01479 750 PRINTS Tyrosine kinase catalytic domain signature 583 601 IPR001245 GO:0004672|GO:0006468
Vimu2g01479 750 PRINTS Tyrosine kinase catalytic domain signature 649 671 IPR001245 GO:0004672|GO:0006468
Vimu2g01479 750 PRINTS Tyrosine kinase catalytic domain signature 630 640 IPR001245 GO:0004672|GO:0006468
Vimu2g01479 750 PRINTS Tyrosine kinase catalytic domain signature 544 557 IPR001245 GO:0004672|GO:0006468
Vimu2g01479 750 PRINTS Tyrosine kinase catalytic domain signature 693 715 IPR001245 GO:0004672|GO:0006468
Vimu2g01479 750 MobiDBLite consensus disorder prediction 265 346 - -
Vimu2g01479 750 Coils Coil 39 59 - -
Vimu2g01479 750 NCBIfam PAS domain S-box protein 94 200 IPR000014 -
Vimu2g01479 750 MobiDBLite consensus disorder prediction 219 238 - -
Vimu2g01479 750 SMART pas_2 93 160 IPR000014 -
Vimu2g01479 750 Pfam PAS fold 95 200 IPR013767 GO:0006355
Vimu2g01479 750 Pfam Protein tyrosine and serine/threonine kinase 470 722 IPR001245 GO:0004672|GO:0006468
Vimu2g01479 750 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 285 728 - -
Vimu2g01479 750 SMART serkin_6 470 730 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01479 750 ProSiteProfiles Protein kinase domain profile. 470 730 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01479 750 FunFam PAS domain-containing protein tyrosine kinase family protein 548 739 - -
Vimu2g01479 750 ProSiteProfiles PAS repeat profile. 91 147 IPR000014 -
Vimu2g01479 750 SUPERFAMILY PYP-like sensor domain (PAS domain) 97 200 IPR035965 -
Vimu2g01479 750 Gene3D Phosphorylase Kinase; domain 1 463 547 - -
Vimu2g01479 750 MobiDBLite consensus disorder prediction 329 346 - -
Vimu2g01479 750 CDD PAS 106 203 IPR000014 -
Vimu2g01479 750 SUPERFAMILY Protein kinase-like (PK-like) 457 722 IPR011009 -
Vimu2g01479 750 MobiDBLite consensus disorder prediction 369 427 - -
Vimu2g01479 750 CDD STKc_MAP3K-like 476 722 - -
Vimu2g01479 750 Gene3D PAS domain 104 205 - -
Vimu2g01479 750 MobiDBLite consensus disorder prediction 297 312 - -
Vimu2g01479 750 FunFam PAS domain-containing protein tyrosine kinase 463 547 - -
Vimu2g01479 750 Gene3D Transferase(Phosphotransferase) domain 1 548 750 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01479 Vimu-Chr2 10166066 10170882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01479 40 739 MAP Kinase Kinase Kinase AT3G06620 58.839 0.0 867
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vimu2g01479 PK_Tyr_Ser-Thr 6.9e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01479 - - gmx:100815858 1212.21