Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01473 ATGCCTAATTTTCCTTCATCTTCTTCTTTTCTTCTTTCATCATTCATGGTGGCCATTCTCATTTCTTGCATTTCACATTCTGCCCTTGCTGGTGCTAATCATGGAGCAATAATCGCCGACTCTCCTATGTTGACGAGCAAGTTAGGAATTAATCGTACTATCAAAGTAGACATCAATGGCCAGGGGGACTTCACAAGTGTCCAAGATGCCATAGATTCCATTCCTGAAGAAAACTCTCAGTGGGTAATCGTTCATGTCAGGAAAGGACTGTACAGAGAAAAGGTGCTCATACATAATAAGCCTTATATATTCCTGAGAGGGAATGGGCGAGGAAGAACTTCCATAACTTCGTCTCAGAGCTCTACAGACAACGTGGCTTCTGCCACCTTCAGAGTCGAAGCACATGACGTCATTGTCTTTGGAATTAGCTTCCAGAATGAGGCACCTACGGGGGTTGCTTATACCTCGCAAAACCAATCGGTGGCAGTATATGTGGCAGCAGATAAAGTGGCATTTTATCATTGTTCATTTTACAGTACTCACAACACTCTTTTTGATCAAAGAGGAAGACACTACTATGCTAATTGCTACATTCAAGGGTCAATAGATTTCATATTTGGTCGTGCCAGAACAATCTTTTATAATCCTGAAATATTTGTGATAGATGATAAAAGGTTAAAGATTCGAGGTTCAATCACGGCTCATAATAGGGAAAATGCAGAAGAGCTGAATGGATATATCTTCATCAAAGGAAAGGTTTATGGCATTGGTTCAGTTTACCTAGGAAGGGCGAAGGGTTCTTATTCTAGGGTGATTTTTTCTGAGACATATCTGTCGAAGACCATTGTCGCTGCGGGGTGGACCAATTGGAGCCATGATGGTAGCACAGAAAATATTGTCCATGCGGAGTACAATACCCGTGGACCTGGTTCTGTAAAGGATGGACGTGCTCCTTGGTCGCTGCAGCTAACTAAGCAAGAAGTTGAGCCCTTTTTATCCATTGATTATATTGATGGCAAAAATTGGTTGCCAGTATGGTTGTAA 1044 0.4186 MPNFPSSSSFLLSSFMVAILISCISHSALAGANHGAIIADSPMLTSKLGINRTIKVDINGQGDFTSVQDAIDSIPEENSQWVIVHVRKGLYREKVLIHNKPYIFLRGNGRGRTSITSSQSSTDNVASATFRVEAHDVIVFGISFQNEAPTGVAYTSQNQSVAVYVAADKVAFYHCSFYSTHNTLFDQRGRHYYANCYIQGSIDFIFGRARTIFYNPEIFVIDDKRLKIRGSITAHNRENAEELNGYIFIKGKVYGIGSVYLGRAKGSYSRVIFSETYLSKTIVAAGWTNWSHDGSTENIVHAEYNTRGPGSVKDGRAPWSLQLTKQEVEPFLSIDYIDGKNWLPVWL 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01473 347 Gene3D - 48 346 IPR012334 -
Vimu2g01473 347 ProSitePatterns Pectinesterase signature 2. 198 207 IPR033131 -
Vimu2g01473 347 SUPERFAMILY Pectin lyase-like 50 345 IPR011050 -
Vimu2g01473 347 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 50 343 - -
Vimu2g01473 347 FunFam Pectinesterase 49 347 - -
Vimu2g01473 347 Pfam Pectinesterase 55 339 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01473 Vimu-Chr2 10123923 10125404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01473 51 343 Carbohydrate Esterase AT5G47500 35.855 2.20e-65 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01473 - - gmx:100792967 522.702