Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01470 ATGCTCCAGGCGTTGATGAGTCTTATCGCGCGCTGTTGGAAACCGTTCGGGCTCGGTGACGACGCCAATGCCGGAAGAGAATGCAAGGACGGCCTCCTCTGGTTCCGCGACATCGGAAGGTTCGCCGCCGGCGATTTCTCCATGGCCGTCGTCCAGGCCAACCAGGTCCTCGAGGACCAGAGCCAGATCGAGTCCGGGCCCTTCGGCACCTTCGTCGGAGTCTACGACGGCCACGGCGGCCCCGATTGTTCGCGTTATGTTTGTGATAACTTGTTCCGTAATCTCCAAGTGATTTCCGCTTTTCGTGAATTTATCTTTGCTTTTAAAAGTAGTTGTGCTTTTCAGTCTTCACAAGAGTCACGAACAGTTGAAAGATGTGTGCTGGTTCTTATCTGTGTTGGAGATCTTTTGGAGCCATTTGTATGTTGTTATTGTCTTAGGAGTGGTGTTTGTGCTGCAGCGATATTGGCCGAGTCACATAGTGTTGTGACTTCTGAGGTCATTCAACAGGCGTTCCGGCGGACCGAGGAGGGATTCACGGCGCTTGTTTCAGAGTTGTGGAGCTCCCGGCCGCAAATTGCAACCACTGGAACGTGTTGTTTGGTTGGAGTTATTTGTCGGCAGACGCTGTTTGTGGCGAGTCTTGGAGATTCCCGTGCTGTGTTGGGTAGGAGAGTTGGCAACACTGGTGGGATGGCTGCAATGCAGCTGTCCACCGAGCACAACGCGAATATTGAGGCTGTTAGGCAGGAGCTTAAGGAATTGCACCCGGATGACCCCCAGATTGTTGTCCTGAGACATGGAGTTTGGAGAGTCAAGGGCATAATTCAGGTAATTTCTGGAAACCATGCTGCATGTCAAATATTAGTTGTGGGAATTCTCTATTTAGTTTTCTGGTTGAAGTTCCCTGAAGAAGGAATTTGGTTGGAGTTTTGGGTTTTGATGACTGAACCTTTCTCCTTAGGCCTCAAAAGAGAAGAGCAAATCAGTCTTTACATCTCACATTCTACCTCTGAACTCCCCTCTCGCCTTTCTGCATTCTGCCTCTCTATTTCCCGCAGTGTTTCCAATGAGGTTTCTAGATCTATAGGTGACGTATATATGAAACATGCGCAGTTTAACCGGGAACCCATTAATGCGAAATTCAGACTCCCTGAACCAATGAACATGCCTTTCTTGTCTGCTAATCCAACTGTTATTTCTCATCCAATCCAACCAAATGATTCCTTCCTTATATTTGCGTCAGATGGTTTATGGGAGCACCTGAGTAATGATCAAGCAGTGGATATTGTTCACAGCAGTCCACGTGCGGGTAGTGCCAAGAGACTTATCAAGGCTGCCCTACAAGAAGCAGCAAGAAAACGTGAAATGCGATATTCAGACCTTTATAAGATTGACAAGAAGGTTCGTCGCCATTTTCACGACGATATAACTGTTATTGTTTTATTCTTAAACCACGACCTTATATCCAGAGGCGCAGTTCTAAATTCGCCACTCACAGTTCGAAGTGCTCTCGATCACTGA 1524 0.4783 MLQALMSLIARCWKPFGLGDDANAGRECKDGLLWFRDIGRFAAGDFSMAVVQANQVLEDQSQIESGPFGTFVGVYDGHGGPDCSRYVCDNLFRNLQVISAFREFIFAFKSSCAFQSSQESRTVERCVLVLICVGDLLEPFVCCYCLRSGVCAAAILAESHSVVTSEVIQQAFRRTEEGFTALVSELWSSRPQIATTGTCCLVGVICRQTLFVASLGDSRAVLGRRVGNTGGMAAMQLSTEHNANIEAVRQELKELHPDDPQIVVLRHGVWRVKGIIQVISGNHAACQILVVGILYLVFWLKFPEEGIWLEFWVLMTEPFSLGLKREEQISLYISHSTSELPSRLSAFCLSISRSVSNEVSRSIGDVYMKHAQFNREPINAKFRLPEPMNMPFLSANPTVISHPIQPNDSFLIFASDGLWEHLSNDQAVDIVHSSPRAGSAKRLIKAALQEAARKREMRYSDLYKIDKKVRRHFHDDITVIVLFLNHDLISRGAVLNSPLTVRSALDH 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01470 507 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Vimu2g01470 507 ProSiteProfiles PPM-type phosphatase domain profile. 45 484 IPR001932 -
Vimu2g01470 507 PANTHER PROTEIN PHOSPHATASE 43 482 IPR015655 GO:0004722|GO:0006470
Vimu2g01470 507 Pfam Protein phosphatase 2C 353 453 IPR001932 -
Vimu2g01470 507 Pfam Protein phosphatase 2C 163 246 IPR001932 -
Vimu2g01470 507 CDD PP2Cc 46 484 IPR001932 -
Vimu2g01470 507 SUPERFAMILY PP2C-like 54 485 IPR036457 -
Vimu2g01470 507 Gene3D - 39 492 IPR036457 -
Vimu2g01470 507 SMART PP2C_4 39 482 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01470 Vimu-Chr2 10104460 10112974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01470 358 437 PP2C-type Phosphatase Gene Family AT3G17090 68.750 1.47e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01470 K01102 - mus:103998823 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01470 2 10104460 10112974 Vimu2g01470 2 10104460 10112974 ECH
Vimu7g01705 7 15763990 15766646 Vimu2g01470 2 10104460 10112974 PCT