Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01467 ATGTCCTCCTCTCTCATGCCAAACCCAACCGATCGCTCGCGTGACTCTCACCGCCCAAAGAAGAAGAAGAAATCCCCCGCCAAGCCCCAACCCCACCAAGACCACTCCCACGCCACATGGAAAACCCACGCGCAGCAGAACCTATATTCCTCCAAGCTCCACCAGGCCCTCGCGCGTGTCAACATCTCCGCCGACACGCCCCGCCGTGGCCGGGCCGGGAGGACGCGCTGGAGCCGCGCCATCCTCACCAACCGGCTCAAGCTCAAGTTCAGGAAGACACCGCACAGGCGACCCAAGGTGGTTGGCCCGCCCCGCCCCAAGAAGCCCCGCTTCAGCGTCCTCCGTCTCAAGGGAAAAACCCTTCCCTCCGTTCAGCGCAAAGTTAGAGTCCTCGGCCGGTTGGTTCCCGGTTGCAGAAAAGAACCCCTTCCGATCATTCTCGAAGAAGCCATCGATTACATACCCGCGCTCGAGATGCAGGTTCGCGCCATGGCGGATCTCGCTCGATTACTCCTGGGCTCCTCCTCTCCTTCTTCCTCTTCCTCCGCCGCCGCATCCACCTCCGCGCCGTCGAGTTGA 579 0.6218 MSSSLMPNPTDRSRDSHRPKKKKKSPAKPQPHQDHSHATWKTHAQQNLYSSKLHQALARVNISADTPRRGRAGRTRWSRAILTNRLKLKFRKTPHRRPKVVGPPRPKKPRFSVLRLKGKTLPSVQRKVRVLGRLVPGCRKEPLPIILEEAIDYIPALEMQVRAMADLARLLLGSSSPSSSSSAAASTSAPSS 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01467 192 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 42 174 IPR044660 GO:0006355
Vimu2g01467 192 MobiDBLite consensus disorder prediction 173 192 - -
Vimu2g01467 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 174 IPR036638 GO:0046983
Vimu2g01467 192 MobiDBLite consensus disorder prediction 1 44 - -
Vimu2g01467 192 CDD bHLH_AtIBH1_like 113 164 IPR044549 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01467 Vimu-Chr2 10086262 10086882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01467 37 177 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 48.023 7.65e-39 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01467 - - gmx:100792237 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01467 2 10086262 10086882 Vimu2g01467 2 10086262 10086882 ECH
Vimu7g01699 7 15729538 15730107 Vimu2g01467 2 10086262 10086882 PCT