Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01465 ATGGCGGAGGAGAAAAGAGAGGAAGAAGCGCACCCCAACAACGAACCATCCACCACCATGGCATTCTCCGACGAGATTCCCAATAACTTCACTTTCCCTTCCCAACCACTCACCATCTTCGACGCCATGCCGCCGCCGCCTTTCTCTTCTTCCTGCGACAACAAGGCCTCGCCCTTCGGCTTCCTCGACCTGCTCGGCGTGCACGACTACCACGCTCCGCTGTTCGATTGGCCCCCCTCCGTTGCGCCGTCGCGGGCGAGCTCCAACGTGCCGGACTCCTCGGAGGTGCTGAACACTCCCGCGTCGCCCAACTTGTCGTCGATTTCGTCGTCTTCGAATGAGGCCACCGCCACCGCCACGACCACCACCAGGGCGGAGCAGAGTGGTAAAGGTGGGTTTGAACACGAGGAAGCCGAAGCAGAGGAGGAGGAAGAAGAAGGTGGTAATGGAGGCAGAGAGGACCAGGATCAAGACAAGACTAAGAAACAGTTGAAACCGAAGAAGAAGAACCAAAAGAAGCAAAGAGAACCAAGATTTGCGTTCATGACAAAGAGCGAGGTTGATCACCTAGACGATGGTTATAAGTGGCGCAAGTACGGCCAAAAAGCTGTGAAAAACAGCCCTTATCCCAGGAGCTACTACCGTTGCACCACCACCGGTTGCGGCGTGAAAAAGCGAGTGGAGCGTTCCTCCGACGACCCTTCCATCGTGGTTACCACTTACGAGGGGCAGCACACGCACCCTTGCCCTGCTTCGTCTCGGGCCAGCTTCGGGTTCGTGAACGAGCCTGGTGGGTTGGGACATTCCGGCTCCTCACACTTGGTGCTGTCACATCAACACCAACACCAACACCAACACCTACACCAACACCAACCACAAGCTTCGCCTTTGATATATAACTCCAACCCTCCTTTTGTAAACTCCGCCAGTAACTTCATGAACACGACGTCGTTTGGTGGGTTTGGTCATGAGGAGCACGCGAACCGTGGAGGATTCGGGCACGAGGCTTTGTTGAGGGACAATGGGTTGCTTCAGGACATTATTGTGCCATCGCAGGTGAGGAAGGAGGAGAAGGATTGA 1080 0.5565 MAEEKREEEAHPNNEPSTTMAFSDEIPNNFTFPSQPLTIFDAMPPPPFSSSCDNKASPFGFLDLLGVHDYHAPLFDWPPSVAPSRASSNVPDSSEVLNTPASPNLSSISSSSNEATATATTTTRAEQSGKGGFEHEEAEAEEEEEEGGNGGREDQDQDKTKKQLKPKKKNQKKQREPRFAFMTKSEVDHLDDGYKWRKYGQKAVKNSPYPRSYYRCTTTGCGVKKRVERSSDDPSIVVTTYEGQHTHPCPASSRASFGFVNEPGGLGHSGSSHLVLSHQHQHQHQHLHQHQPQASPLIYNSNPPFVNSASNFMNTTSFGGFGHEEHANRGGFGHEALLRDNGLLQDIIVPSQVRKEEKD 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01465 359 MobiDBLite consensus disorder prediction 14 36 - -
Vimu2g01465 359 SMART WRKY_cls 190 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu2g01465 359 Gene3D WRKY domain 174 251 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu2g01465 359 MobiDBLite consensus disorder prediction 137 151 - -
Vimu2g01465 359 Pfam WRKY DNA -binding domain 191 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu2g01465 359 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 99 291 IPR044810 GO:0003700
Vimu2g01465 359 MobiDBLite consensus disorder prediction 1 55 - -
Vimu2g01465 359 SUPERFAMILY WRKY DNA-binding domain 182 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu2g01465 359 ProSiteProfiles WRKY domain profile. 185 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu2g01465 359 FunFam WRKY transcription factor 57 176 250 - -
Vimu2g01465 359 MobiDBLite consensus disorder prediction 82 181 - -
Vimu2g01465 359 MobiDBLite consensus disorder prediction 82 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01465 Vimu-Chr2 10042260 10044143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01465 160 356 WRKY Transcription Factor Family AT5G49520 55.610 9.62e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu2g01465 WRKY 4.5e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01465 - - gmx:100812252 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01465 2 10042260 10044143 Vimu2g01465 2 10042260 10044143 ECH
Vimu2g01465 2 10042260 10044143 Vimu7g01697 7 15695241 15697072 PCT