Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu2g01465 | ATGGCGGAGGAGAAAAGAGAGGAAGAAGCGCACCCCAACAACGAACCATCCACCACCATGGCATTCTCCGACGAGATTCCCAATAACTTCACTTTCCCTTCCCAACCACTCACCATCTTCGACGCCATGCCGCCGCCGCCTTTCTCTTCTTCCTGCGACAACAAGGCCTCGCCCTTCGGCTTCCTCGACCTGCTCGGCGTGCACGACTACCACGCTCCGCTGTTCGATTGGCCCCCCTCCGTTGCGCCGTCGCGGGCGAGCTCCAACGTGCCGGACTCCTCGGAGGTGCTGAACACTCCCGCGTCGCCCAACTTGTCGTCGATTTCGTCGTCTTCGAATGAGGCCACCGCCACCGCCACGACCACCACCAGGGCGGAGCAGAGTGGTAAAGGTGGGTTTGAACACGAGGAAGCCGAAGCAGAGGAGGAGGAAGAAGAAGGTGGTAATGGAGGCAGAGAGGACCAGGATCAAGACAAGACTAAGAAACAGTTGAAACCGAAGAAGAAGAACCAAAAGAAGCAAAGAGAACCAAGATTTGCGTTCATGACAAAGAGCGAGGTTGATCACCTAGACGATGGTTATAAGTGGCGCAAGTACGGCCAAAAAGCTGTGAAAAACAGCCCTTATCCCAGGAGCTACTACCGTTGCACCACCACCGGTTGCGGCGTGAAAAAGCGAGTGGAGCGTTCCTCCGACGACCCTTCCATCGTGGTTACCACTTACGAGGGGCAGCACACGCACCCTTGCCCTGCTTCGTCTCGGGCCAGCTTCGGGTTCGTGAACGAGCCTGGTGGGTTGGGACATTCCGGCTCCTCACACTTGGTGCTGTCACATCAACACCAACACCAACACCAACACCTACACCAACACCAACCACAAGCTTCGCCTTTGATATATAACTCCAACCCTCCTTTTGTAAACTCCGCCAGTAACTTCATGAACACGACGTCGTTTGGTGGGTTTGGTCATGAGGAGCACGCGAACCGTGGAGGATTCGGGCACGAGGCTTTGTTGAGGGACAATGGGTTGCTTCAGGACATTATTGTGCCATCGCAGGTGAGGAAGGAGGAGAAGGATTGA | 1080 | 0.5565 | MAEEKREEEAHPNNEPSTTMAFSDEIPNNFTFPSQPLTIFDAMPPPPFSSSCDNKASPFGFLDLLGVHDYHAPLFDWPPSVAPSRASSNVPDSSEVLNTPASPNLSSISSSSNEATATATTTTRAEQSGKGGFEHEEAEAEEEEEEGGNGGREDQDQDKTKKQLKPKKKNQKKQREPRFAFMTKSEVDHLDDGYKWRKYGQKAVKNSPYPRSYYRCTTTGCGVKKRVERSSDDPSIVVTTYEGQHTHPCPASSRASFGFVNEPGGLGHSGSSHLVLSHQHQHQHQHLHQHQPQASPLIYNSNPPFVNSASNFMNTTSFGGFGHEEHANRGGFGHEALLRDNGLLQDIIVPSQVRKEEKD | 359 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu2g01465 | 359 | MobiDBLite | consensus disorder prediction | 14 | 36 | - | - | |
Vimu2g01465 | 359 | SMART | WRKY_cls | 190 | 249 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vimu2g01465 | 359 | Gene3D | WRKY domain | 174 | 251 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vimu2g01465 | 359 | MobiDBLite | consensus disorder prediction | 137 | 151 | - | - | |
Vimu2g01465 | 359 | Pfam | WRKY DNA -binding domain | 191 | 248 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vimu2g01465 | 359 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 99 | 291 | IPR044810 | GO:0003700 | |
Vimu2g01465 | 359 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Vimu2g01465 | 359 | SUPERFAMILY | WRKY DNA-binding domain | 182 | 250 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vimu2g01465 | 359 | ProSiteProfiles | WRKY domain profile. | 185 | 250 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vimu2g01465 | 359 | FunFam | WRKY transcription factor 57 | 176 | 250 | - | - | |
Vimu2g01465 | 359 | MobiDBLite | consensus disorder prediction | 82 | 181 | - | - | |
Vimu2g01465 | 359 | MobiDBLite | consensus disorder prediction | 82 | 128 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu2g01465 | Vimu-Chr2 | 10042260 | 10044143 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu2g01465 | 160 | 356 | WRKY Transcription Factor Family | AT5G49520 | 55.610 | 9.62e-57 | 188 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Vimu2g01465 | WRKY | 4.5e-27 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu2g01465 | - | - | gmx:100812252 | 389.808 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu2g01465 | 2 | 10042260 | 10044143 | Vimu2g01465 | 2 | 10042260 | 10044143 | ECH | |
Vimu2g01465 | 2 | 10042260 | 10044143 | Vimu7g01697 | 7 | 15695241 | 15697072 | PCT |